Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL5P25 Gene

Aliases for RPL5P25 Gene

  • Ribosomal Protein L5 Pseudogene 25 2 3 5
  • RPL5_10_1021 3

External Ids for RPL5P25 Gene

Previous GeneCards Identifiers for RPL5P25 Gene

  • GC10U901099

Summaries for RPL5P25 Gene

GeneCards Summary for RPL5P25 Gene

RPL5P25 (Ribosomal Protein L5 Pseudogene 25) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL5P25 Gene

Genomics for RPL5P25 Gene

Regulatory Elements for RPL5P25 Gene

Enhancers for RPL5P25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F013054 0.3 FANTOM5 0.8 +4.4 4441 0.3 ZNF366 ZNF512 CCDC3 OPTN MIR548Q RPL5P25 RNA5SP300
GH10F013087 0.8 Ensembl ENCODE 0.3 -29.5 -29504 1.6 SCRT1 BHLHE40 CEBPB JUNB FEZF1 EBF1 ZEB2 EP300 JUND ZNF366 MIR548Q OPTN RPL5P25
GH10F013091 0.2 ENCODE 0.3 -33.6 -33583 1.8 CBX3 TAL1 YY1 ZFHX2 GATA2 NCOR1 HNF4G TRIM24 CREM ZBTB20 OPTN RPL5P25
GH10F013089 0.3 FANTOM5 0.3 -30.7 -30662 0.3 IRF2 IRF1 OPTN RPL5P25
GH10F012983 0.6 ENCODE 0.2 +74.3 74336 1.2 PKNOX1 ZNF146 ZNF140 TSHZ1 SETDB1 ENSG00000239665 ENSG00000273474 MIR548Q CCDC3 RNA5SP300 RPL5P25
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL5P25 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL5P25 Gene

Chromosome:
10
Start:
13,057,890 bp from pter
End:
13,058,725 bp from pter
Size:
836 bases
Orientation:
Minus strand

Genomic View for RPL5P25 Gene

Genes around RPL5P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P25 Gene

Proteins for RPL5P25 Gene

Post-translational modifications for RPL5P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P25 Gene

Domains & Families for RPL5P25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL5P25 Gene

Function for RPL5P25 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P25 Gene

Localization for RPL5P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL5P25 Gene

Pathways & Interactions for RPL5P25 Gene

SuperPathways for RPL5P25 Gene

No Data Available

Interacting Proteins for RPL5P25 Gene

Gene Ontology (GO) - Biological Process for RPL5P25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL5P25 Gene

Transcripts for RPL5P25 Gene

mRNA/cDNA for RPL5P25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P25 Gene

No ASD Table

Relevant External Links for RPL5P25 Gene

GeneLoc Exon Structure for
RPL5P25
ECgene alternative splicing isoforms for
RPL5P25

Expression for RPL5P25 Gene

mRNA expression in normal human tissues for RPL5P25 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL5P25 Gene:

RPL5P25
genes like me logo Genes that share expression patterns with RPL5P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL5P25 Gene

Orthologs for RPL5P25 Gene

Evolution for RPL5P25 Gene

ENSEMBL:
Gene Tree for RPL5P25 (if available)
TreeFam:
Gene Tree for RPL5P25 (if available)

No data available for Orthologs for RPL5P25 Gene

Paralogs for RPL5P25 Gene

No data available for Paralogs for RPL5P25 Gene

Variants for RPL5P25 Gene

Relevant External Links for RPL5P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P25 Gene

Disorders for RPL5P25 Gene

Relevant External Links for RPL5P25

Genetic Association Database (GAD)
RPL5P25

No disorders were found for RPL5P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P25 Gene

Publications for RPL5P25 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists. (PMID: 20526338) Johnson A.D. … Becker L.C. (Nat. Genet. 2010) 46 64

Products for RPL5P25 Gene

Sources for RPL5P25 Gene

Content
Loading form....