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Aliases for RPL5P25 Gene

Aliases for RPL5P25 Gene

  • Ribosomal Protein L5 Pseudogene 25 2 3 5
  • RPL5_10_1021 3

External Ids for RPL5P25 Gene

Previous GeneCards Identifiers for RPL5P25 Gene

  • GC10U901099

Summaries for RPL5P25 Gene

GeneCards Summary for RPL5P25 Gene

RPL5P25 (Ribosomal Protein L5 Pseudogene 25) is a Pseudogene.

Additional gene information for RPL5P25 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL5P25 Gene

Genomics for RPL5P25 Gene

GeneHancer (GH) Regulatory Elements for RPL5P25 Gene

Promoters and enhancers for RPL5P25 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I013058 Promoter 0.5 EPDnew 550.8 +0.5 522 0.1 CCDC3 RPL5P25 OPTN PRPF18 RNA5SP300
GH10I013001 Promoter 1.5 EPDnew Ensembl 0.2 +56.9 56925 0.8 ZNF76 BMI1 ZIC2 ZNF2 ZNF335 GLIS2 POLR2A ZBTB48 PRDM10 EZH2 CCDC3 OPTN RPL5P25 RNA5SP300
GH10I013087 Enhancer 0.9 Ensembl ENCODE 0.3 -29.5 -29504 1.6 ZBTB21 EBF1 FEZF1 BATF ZNF335 ZNF366 SCRT2 FOSL2 FOS TCF7L2 MIR548Q OPTN CCDC3 RPL5P25
GH10I013091 Enhancer 0.8 ENCODE 0.3 -33.6 -33582 1.8 HDAC1 RAD21 YY1 TCF12 GATA2 EGR1 ZSCAN5C CREM EGR2 RXRA CCDC3 OPTN RPL5P25
GH10I012958 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 +98.2 98163 3.7 FOXA2 JUND NFIA RXRA POLR2A MAX HNF4A NR2F2 CCDC3 OPTN RNA5SP300 LOC105376418 RPL5P25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL5P25 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL5P25 Gene

Genomic Locations for RPL5P25 Gene
chr10:13,057,890-13,058,725
(GRCh38/hg38)
Size:
836 bases
Orientation:
Minus strand
chr10:13,099,890-13,100,725
(GRCh37/hg19)

Genomic View for RPL5P25 Gene

Genes around RPL5P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P25 Gene

Proteins for RPL5P25 Gene

Post-translational modifications for RPL5P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P25 Gene

Domains & Families for RPL5P25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL5P25 Gene

Function for RPL5P25 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P25 Gene

Localization for RPL5P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P25 Gene

Pathways & Interactions for RPL5P25 Gene

SuperPathways for RPL5P25 Gene

No Data Available

Interacting Proteins for RPL5P25 Gene

Gene Ontology (GO) - Biological Process for RPL5P25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL5P25 Gene

Drugs & Compounds for RPL5P25 Gene

No Compound Related Data Available

Transcripts for RPL5P25 Gene

mRNA/cDNA for RPL5P25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P25 Gene

No ASD Table

Relevant External Links for RPL5P25 Gene

GeneLoc Exon Structure for
RPL5P25
ECgene alternative splicing isoforms for
RPL5P25

Expression for RPL5P25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL5P25 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL5P25 Gene:

RPL5P25
genes like me logo Genes that share expression patterns with RPL5P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P25 Gene

Orthologs for RPL5P25 Gene

Evolution for RPL5P25 Gene

ENSEMBL:
Gene Tree for RPL5P25 (if available)
TreeFam:
Gene Tree for RPL5P25 (if available)

No data available for Orthologs for RPL5P25 Gene

Paralogs for RPL5P25 Gene

No data available for Paralogs for RPL5P25 Gene

Variants for RPL5P25 Gene

Additional Variant Information for RPL5P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P25 Gene

Disorders for RPL5P25 Gene

Additional Disease Information for RPL5P25

Genetic Association Database
(GAD)

No disorders were found for RPL5P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P25 Gene

Publications for RPL5P25 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide meta-analyses identifies seven loci associated with platelet aggregation in response to agonists. (PMID: 20526338) Johnson AD … Becker LC (Nature genetics 2010) 44 58

Products for RPL5P25 Gene

Sources for RPL5P25 Gene

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