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Aliases for RPL5P21 Gene

Subcategory (RNA class) for RPL5P21 Gene

lncRNA

Aliases for RPL5P21 Gene

  • Ribosomal Protein L5 Pseudogene 21 2 3 5
  • RPL5_7_753 3

External Ids for RPL5P21 Gene

ORGUL Members for RPL5P21 Gene

Previous GeneCards Identifiers for RPL5P21 Gene

  • GC06U901582
  • GC06M130077

Summaries for RPL5P21 Gene

GeneCards Summary for RPL5P21 Gene

RPL5P21 (Ribosomal Protein L5 Pseudogene 21) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL5P21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL5P21 Gene

Genomics for RPL5P21 Gene

GeneHancer (GH) Regulatory Elements for RPL5P21 Gene

Promoters and enhancers for RPL5P21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I130017 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 11.1 -262.7 -262731 3.9 ATF1 ARNT ARID4B GLI4 ZNF2 IRF4 ZNF48 YY1 ZNF766 GLIS2 L3MBTL3 RPL5P21 ARHGAP18 SAMD3 LOC105378000
GH06I129677 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +73.4 73382 12.9 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 IRF4 ARHGAP18 RPL5P21 L3MBTL3 LOC102723409
GH06I129488 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 10.8 +265.1 265115 6.4 ELF3 ARNT NFRKB ZBTB40 BATF IRF4 GTF3C2 ZNF766 POLR3A SMARCC2 GC06M129493 RPL5P21 ARHGAP18 ENSG00000233351 LAMA2
GH06I129670 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +83.7 83710 5.4 HDGF PKNOX1 ATF1 SMAD1 ARNT IRF4 TCF12 ZNF143 ATF7 FOS ARHGAP18 RPL5P21 LOC102723409
GH06I129497 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +256.7 256672 6.3 ATF1 FEZF1 DMAP1 ZNF2 TCF12 GATA2 ARID2 FOS ATF7 MXD4 RPL5P21 ARHGAP18 GC06M129493 LOC102723409 LAMA2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL5P21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL5P21 Gene

Genomic Locations for RPL5P21 Gene
chr6:129,756,298-129,757,112
(GRCh38/hg38)
Size:
815 bases
Orientation:
Minus strand
chr6:130,077,443-130,078,257
(GRCh37/hg19)

Genomic View for RPL5P21 Gene

Genes around RPL5P21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P21 Gene

Proteins for RPL5P21 Gene

Post-translational modifications for RPL5P21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P21 Gene

Domains & Families for RPL5P21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL5P21 Gene

Function for RPL5P21 Gene

Phenotypes From GWAS Catalog for RPL5P21 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P21 Gene

Localization for RPL5P21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P21 Gene

Pathways & Interactions for RPL5P21 Gene

SuperPathways for RPL5P21 Gene

No Data Available

Interacting Proteins for RPL5P21 Gene

Gene Ontology (GO) - Biological Process for RPL5P21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL5P21 Gene

Drugs & Compounds for RPL5P21 Gene

No Compound Related Data Available

Transcripts for RPL5P21 Gene

mRNA/cDNA for RPL5P21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P21 Gene

No ASD Table

Relevant External Links for RPL5P21 Gene

GeneLoc Exon Structure for
RPL5P21
ECgene alternative splicing isoforms for
RPL5P21

Expression for RPL5P21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL5P21 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL5P21 Gene:

RPL5P21
genes like me logo Genes that share expression patterns with RPL5P21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P21 Gene

Orthologs for RPL5P21 Gene

Evolution for RPL5P21 Gene

ENSEMBL:
Gene Tree for RPL5P21 (if available)
TreeFam:
Gene Tree for RPL5P21 (if available)

No data available for Orthologs for RPL5P21 Gene

Paralogs for RPL5P21 Gene

No data available for Paralogs for RPL5P21 Gene

Variants for RPL5P21 Gene

Additional Variant Information for RPL5P21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P21 Gene

Disorders for RPL5P21 Gene

Additional Disease Information for RPL5P21

Genetic Association Database
(GAD)

No disorders were found for RPL5P21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P21 Gene

Publications for RPL5P21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 44 58

Products for RPL5P21 Gene

Sources for RPL5P21 Gene

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