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Aliases for RPL5P21 Gene

Subcategory (RNA class) for RPL5P21 Gene

lncRNA

Aliases for RPL5P21 Gene

  • Ribosomal Protein L5 Pseudogene 21 2 3 5
  • RPL5_7_753 3

External Ids for RPL5P21 Gene

ORGUL Members for RPL5P21 Gene

Previous GeneCards Identifiers for RPL5P21 Gene

  • GC06U901582
  • GC06M130077

Summaries for RPL5P21 Gene

GeneCards Summary for RPL5P21 Gene

RPL5P21 (Ribosomal Protein L5 Pseudogene 21) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL5P21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL5P21 Gene

Genomics for RPL5P21 Gene

Regulatory Elements for RPL5P21 Gene

Enhancers for RPL5P21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H129677 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +73.4 73382 12 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 YY1 ARHGAP18 RPL5P21 L3MBTL3 LOC102723409
GH06H129670 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +83.7 83711 5 HDGF PKNOX1 ATF1 ARNT TCF12 GATA2 ZNF143 ATF7 FOS RUNX3 ARHGAP18 RPL5P21 LOC102723409
GH06H129497 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +256.7 256672 6 ATF1 FEZF1 DMAP1 ZNF2 TCF12 GATA2 FOS ATF7 MXD4 REST RPL5P21 ARHGAP18 GC06M129493 LOC102723409
GH06H129661 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +94.1 94083 3 HDGF PKNOX1 ZFP64 ARID4B TCF12 ZNF766 GATA2 ELK1 RUNX3 MXD4 ARHGAP18 RPL5P21 LOC102723409
GH06H129664 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +90.1 90067 4 HDAC1 NFIB ZSCAN4 RAD21 ZNF766 GATA2 EGR1 CEBPB ZEB2 SMARCB1 ARHGAP18 RPL5P21 LOC102723409
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL5P21 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL5P21 Gene

Chromosome:
6
Start:
129,756,298 bp from pter
End:
129,757,112 bp from pter
Size:
815 bases
Orientation:
Minus strand

Genomic View for RPL5P21 Gene

Genes around RPL5P21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P21 Gene

Proteins for RPL5P21 Gene

Post-translational modifications for RPL5P21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P21 Gene

Domains & Families for RPL5P21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL5P21 Gene

Function for RPL5P21 Gene

Phenotypes From GWAS Catalog for RPL5P21 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL5P21
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P21 Gene

Localization for RPL5P21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P21 Gene

Pathways & Interactions for RPL5P21 Gene

SuperPathways for RPL5P21 Gene

No Data Available

Interacting Proteins for RPL5P21 Gene

Gene Ontology (GO) - Biological Process for RPL5P21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL5P21 Gene

Drugs & Compounds for RPL5P21 Gene

No Compound Related Data Available

Transcripts for RPL5P21 Gene

mRNA/cDNA for RPL5P21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL5P21
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P21 Gene

No ASD Table

Relevant External Links for RPL5P21 Gene

GeneLoc Exon Structure for
RPL5P21
ECgene alternative splicing isoforms for
RPL5P21

Expression for RPL5P21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL5P21 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL5P21 Gene:

RPL5P21
genes like me logo Genes that share expression patterns with RPL5P21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P21 Gene

Orthologs for RPL5P21 Gene

Evolution for RPL5P21 Gene

ENSEMBL:
Gene Tree for RPL5P21 (if available)
TreeFam:
Gene Tree for RPL5P21 (if available)

No data available for Orthologs for RPL5P21 Gene

Paralogs for RPL5P21 Gene

No data available for Paralogs for RPL5P21 Gene

Variants for RPL5P21 Gene

Relevant External Links for RPL5P21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P21 Gene

Disorders for RPL5P21 Gene

Relevant External Links for RPL5P21

Genetic Association Database (GAD)
RPL5P21

No disorders were found for RPL5P21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P21 Gene

Publications for RPL5P21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S … Cupples LA (BMC medical genetics 2007) 45 60

Products for RPL5P21 Gene

Sources for RPL5P21 Gene

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