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Aliases for RPL5P21 Gene

Subcategory (RNA class) for RPL5P21 Gene

lncRNA

Aliases for RPL5P21 Gene

  • Ribosomal Protein L5 Pseudogene 21 2 3 5
  • RPL5_7_753 3

External Ids for RPL5P21 Gene

ORGUL Members for RPL5P21 Gene

Previous GeneCards Identifiers for RPL5P21 Gene

  • GC06U901582
  • GC06M130077

Summaries for RPL5P21 Gene

GeneCards Summary for RPL5P21 Gene

RPL5P21 (Ribosomal Protein L5 Pseudogene 21) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL5P21 Gene

Genomics for RPL5P21 Gene

Regulatory Elements for RPL5P21 Gene

Enhancers for RPL5P21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F129730 0.5 Ensembl ENCODE 12.5 +25.9 25889 2.1 PKNOX1 TBL1XR1 NFRKB ARID4B ZSCAN9 RAD21 CHAMP1 GATA2 CBX5 MIXL1 RPL5P21 ARHGAP18
GH06F129729 0.6 FANTOM5 12.5 +27.8 27780 0.3 HMBOX1 RPL5P21 ARHGAP18
GH06F129677 0.9 FANTOM5 Ensembl ENCODE 11.8 +71.6 71620 16.6 HDGF PKNOX1 ARNT MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ARHGAP18 RPL5P21 L3MBTL3 LOC102723409
GH06F129716 1 Ensembl ENCODE 11.6 +39.7 39710 0.8 MLX ARID4B DMAP1 SLC30A9 SP5 MXD4 MIER2 PPARG KAT8 SSRP1 RPL5P21 ARHGAP18
GH06F129590 0.6 ENCODE 11.6 +166.2 166247 1.2 JUND BHLHE40 FOS RPL5P21 LOC102723409 ARHGAP18
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL5P21 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL5P21 Gene

Chromosome:
6
Start:
129,756,298 bp from pter
End:
129,757,112 bp from pter
Size:
815 bases
Orientation:
Minus strand

Genomic View for RPL5P21 Gene

Genes around RPL5P21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P21 Gene

Proteins for RPL5P21 Gene

Post-translational modifications for RPL5P21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P21 Gene

Domains & Families for RPL5P21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL5P21 Gene

Function for RPL5P21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P21 Gene

Localization for RPL5P21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL5P21 Gene

Pathways & Interactions for RPL5P21 Gene

SuperPathways for RPL5P21 Gene

No Data Available

Interacting Proteins for RPL5P21 Gene

Gene Ontology (GO) - Biological Process for RPL5P21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL5P21 Gene

Transcripts for RPL5P21 Gene

mRNA/cDNA for RPL5P21 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P21 Gene

No ASD Table

Relevant External Links for RPL5P21 Gene

GeneLoc Exon Structure for
RPL5P21
ECgene alternative splicing isoforms for
RPL5P21

Expression for RPL5P21 Gene

mRNA expression in normal human tissues for RPL5P21 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL5P21 Gene:

RPL5P21
genes like me logo Genes that share expression patterns with RPL5P21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL5P21 Gene

Orthologs for RPL5P21 Gene

Evolution for RPL5P21 Gene

ENSEMBL:
Gene Tree for RPL5P21 (if available)
TreeFam:
Gene Tree for RPL5P21 (if available)

No data available for Orthologs for RPL5P21 Gene

Paralogs for RPL5P21 Gene

No data available for Paralogs for RPL5P21 Gene

Variants for RPL5P21 Gene

Relevant External Links for RPL5P21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P21 Gene

Disorders for RPL5P21 Gene

Relevant External Links for RPL5P21

Genetic Association Database (GAD)
RPL5P21

No disorders were found for RPL5P21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P21 Gene

Publications for RPL5P21 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64

Products for RPL5P21 Gene

Sources for RPL5P21 Gene

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