Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL5P2 Gene

Subcategory (RNA class) for RPL5P2 Gene

lncRNA

Aliases for RPL5P2 Gene

  • Ribosomal Protein L5 Pseudogene 2 2 3 5
  • RPL5_14_1705 3
  • DJ461P17.5 3

External Ids for RPL5P2 Gene

ORGUL Members for RPL5P2 Gene

Previous GeneCards Identifiers for RPL5P2 Gene

  • GC20U990134
  • GC20M043552
  • GC20M044120
  • GC20M040860

Summaries for RPL5P2 Gene

GeneCards Summary for RPL5P2 Gene

RPL5P2 (Ribosomal Protein L5 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL5P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL5P2 Gene

Genomics for RPL5P2 Gene

GeneHancer (GH) Regulatory Elements for RPL5P2 Gene

Promoters and enhancers for RPL5P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I045507 Enhancer 0.9 FANTOM5 ENCODE 0.4 -15.5 -15542 0.3 MEIS2 MAX EBF1 BATF IRF4 ZBTB40 FOSL1 GATA3 NFATC1 ATF7 ZNF335 SPINT3 RPL5P2
GH20I045508 Enhancer 0.6 ENCODE 0.4 -16.6 -16643 0.5 ZNF197 CEBPG EP300 PPARG RARA NR2C1 FOS RXRB NR2C2 ENSG00000232135 SPINT3 RPL5P2
GH20I045510 Enhancer 0.4 FANTOM5 0.4 -19.0 -18978 0.3 CEBPB CEBPG ZNF335 SYS1 SPINT3 RPL5P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL5P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL5P2 Gene

Genomic Locations for RPL5P2 Gene
chr20:45,490,818-45,491,671
(GRCh38/hg38)
Size:
854 bases
Orientation:
Minus strand
chr20:44,119,458-44,120,311
(GRCh37/hg19)

Genomic View for RPL5P2 Gene

Genes around RPL5P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P2 Gene

Proteins for RPL5P2 Gene

Post-translational modifications for RPL5P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P2 Gene

Domains & Families for RPL5P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL5P2 Gene

Function for RPL5P2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P2 Gene

Localization for RPL5P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL5P2 Gene

Pathways & Interactions for RPL5P2 Gene

SuperPathways for RPL5P2 Gene

No Data Available

Interacting Proteins for RPL5P2 Gene

Gene Ontology (GO) - Biological Process for RPL5P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL5P2 Gene

Drugs & Compounds for RPL5P2 Gene

No Compound Related Data Available

Transcripts for RPL5P2 Gene

mRNA/cDNA for RPL5P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P2 Gene

No ASD Table

Relevant External Links for RPL5P2 Gene

GeneLoc Exon Structure for
RPL5P2
ECgene alternative splicing isoforms for
RPL5P2

Expression for RPL5P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL5P2 Gene

mRNA differential expression in normal tissues according to GTEx for RPL5P2 Gene

This gene is overexpressed in Testis (x19.3), Cervix - Endocervix (x14.5), Prostate (x8.9), Kidney - Cortex (x5.5), and Minor Salivary Gland (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of RPL5P2 Gene:

RPL5P2
genes like me logo Genes that share expression patterns with RPL5P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL5P2 Gene

Orthologs for RPL5P2 Gene

Evolution for RPL5P2 Gene

ENSEMBL:
Gene Tree for RPL5P2 (if available)
TreeFam:
Gene Tree for RPL5P2 (if available)

No data available for Orthologs for RPL5P2 Gene

Paralogs for RPL5P2 Gene

No data available for Paralogs for RPL5P2 Gene

Variants for RPL5P2 Gene

Additional Variant Information for RPL5P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P2 Gene

Disorders for RPL5P2 Gene

Additional Disease Information for RPL5P2

Genetic Association Database
(GAD)

No disorders were found for RPL5P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P2 Gene

Publications for RPL5P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Voxelwise genome-wide association study (vGWAS). (PMID: 20171287) Stein JL … Alzheimer's Disease Neuroimaging Initiative (NeuroImage 2010) 44 58

Products for RPL5P2 Gene

Sources for RPL5P2 Gene

Content
Loading form....