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Aliases for RPL5P2 Gene

Subcategory (RNA class) for RPL5P2 Gene

lncRNA

Aliases for RPL5P2 Gene

  • Ribosomal Protein L5 Pseudogene 2 2 3 5
  • RPL5_14_1705 3
  • DJ461P17.5 3

External Ids for RPL5P2 Gene

ORGUL Members for RPL5P2 Gene

Previous GeneCards Identifiers for RPL5P2 Gene

  • GC20U990134
  • GC20M043552
  • GC20M044120
  • GC20M040860

Summaries for RPL5P2 Gene

GeneCards Summary for RPL5P2 Gene

RPL5P2 (Ribosomal Protein L5 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL5P2 Gene

Genomics for RPL5P2 Gene

Regulatory Elements for RPL5P2 Gene

Enhancers for RPL5P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F045334 1.2 FANTOM5 Ensembl ENCODE 16.2 +149.6 149591 14.4 MLX ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC SSRP1 GLIS1 RCOR2 NCOA5 PCIF1 ZNF335 CD40 ZSWIM1 ENSG00000271984 ENSG00000233352 LOC105372630 ENSG00000237464 RPL5P2
GH20F045933 0.4 ENCODE 16.2 -444.7 -444659 6.3 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC PLTP NEURL2 CD40 WFDC3 SLC2A10 TP53RK FTLP1 RNU6ATAC38P RPL13P2 ENSG00000232135
GH20F045967 0.2 ENCODE 16.2 -479.2 -479203 5.8 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 SP3 NFYC TBX21 NCOA5 CD40 ZNF335 TP53RK PCIF1 SLC2A10 ENSG00000271984 SYS1 FTLP1 RPL13P2
GH20F045507 1 FANTOM5 ENCODE 0.3 -15.5 -15542 0.3 MAX ZNF175 JUNB MNT EP300 JUND GATA3 IKZF1 FOS ZNF335 SPINT3 RPL5P2
GH20F045508 0.2 ENCODE 0.3 -16.6 -16644 0.5 BCOR KLF1 TAF1 HLF ZMYM3 PPARG EP300 RARA JUND ATF3 ENSG00000232135 SPINT3 RPL5P2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL5P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL5P2 Gene

Chromosome:
20
Start:
45,490,818 bp from pter
End:
45,491,671 bp from pter
Size:
854 bases
Orientation:
Minus strand

Genomic View for RPL5P2 Gene

Genes around RPL5P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL5P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL5P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL5P2 Gene

Proteins for RPL5P2 Gene

Post-translational modifications for RPL5P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL5P2 Gene

Domains & Families for RPL5P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL5P2 Gene

Function for RPL5P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL5P2 Gene

Localization for RPL5P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL5P2 Gene

Pathways & Interactions for RPL5P2 Gene

SuperPathways for RPL5P2 Gene

No Data Available

Interacting Proteins for RPL5P2 Gene

Gene Ontology (GO) - Biological Process for RPL5P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL5P2 Gene

Transcripts for RPL5P2 Gene

mRNA/cDNA for RPL5P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL5P2 Gene

No ASD Table

Relevant External Links for RPL5P2 Gene

GeneLoc Exon Structure for
RPL5P2
ECgene alternative splicing isoforms for
RPL5P2

Expression for RPL5P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL5P2 Gene

mRNA differential expression in normal tissues according to GTEx for RPL5P2 Gene

This gene is overexpressed in Testis (x19.3), Cervix - Endocervix (x14.5), Prostate (x8.9), Kidney - Cortex (x5.5), and Minor Salivary Gland (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of RPL5P2 Gene:

RPL5P2
genes like me logo Genes that share expression patterns with RPL5P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL5P2 Gene

Orthologs for RPL5P2 Gene

Evolution for RPL5P2 Gene

ENSEMBL:
Gene Tree for RPL5P2 (if available)
TreeFam:
Gene Tree for RPL5P2 (if available)

No data available for Orthologs for RPL5P2 Gene

Paralogs for RPL5P2 Gene

No data available for Paralogs for RPL5P2 Gene

Variants for RPL5P2 Gene

Relevant External Links for RPL5P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL5P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL5P2 Gene

Disorders for RPL5P2 Gene

Relevant External Links for RPL5P2

Genetic Association Database (GAD)
RPL5P2

No disorders were found for RPL5P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL5P2 Gene

Publications for RPL5P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Voxelwise genome-wide association study (vGWAS). (PMID: 20171287) Stein J.L. … Thompson P. (Neuroimage 2010) 46 64

Products for RPL5P2 Gene

Sources for RPL5P2 Gene

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