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Aliases for RPL39P5 Gene

Aliases for RPL39P5 Gene

  • Ribosomal Protein L39 Pseudogene 5 2 3 5
  • 60S Ribosomal Protein L39 Pseudogene 5 4
  • 60 Ribosomal Protein L39 Pseudogene 5 3
  • RPL39_7_406 3

External Ids for RPL39P5 Gene

Previous GeneCards Identifiers for RPL39P5 Gene

  • GC03U900594
  • GC03M135555
  • GC03M134070
  • GC03M131448

Summaries for RPL39P5 Gene

GeneCards Summary for RPL39P5 Gene

RPL39P5 (Ribosomal Protein L39 Pseudogene 5) is a Pseudogene. GO annotations related to this gene include structural constituent of ribosome.

Additional gene information for RPL39P5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P5 Gene

Genomics for RPL39P5 Gene

Regulatory Elements for RPL39P5 Gene

Enhancers for RPL39P5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H134795 1.1 ENCODE 10 -439.2 -439235 1 HDGF PKNOX1 SIN3A ZNF2 YY1 ZNF143 ZNF207 SP3 REST ZNF592 RYK LOC100421154 HMGB3P14 RPL39P5 RNA5SP141 PIR60355
GH03H134347 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.3 -5281 29 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 ENSG00000260633 RYK TOPBP1 TFP1 RAB6B AMOTL2 RPL39P5 MIR6827
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL39P5 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL39P5 Gene

Chromosome:
3
Start:
134,351,739 bp from pter
End:
134,356,561 bp from pter
Size:
4,823 bases
Orientation:
Minus strand

Genomic View for RPL39P5 Gene

Genes around RPL39P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P5 Gene

Proteins for RPL39P5 Gene

  • Protein details for RPL39P5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q59GN2-R39L5_HUMAN
    Recommended name:
    Putative 60S ribosomal protein L39-like 5
    Protein Accession:
    Q59GN2

    Protein attributes for RPL39P5 Gene

    Size:
    51 amino acids
    Molecular mass:
    6323 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAD92314.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for RPL39P5 Gene

Post-translational modifications for RPL39P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P5 Gene

Domains & Families for RPL39P5 Gene

Protein Domains for RPL39P5 Gene

Suggested Antigen Peptide Sequences for RPL39P5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q59GN2

UniProtKB/Swiss-Prot:

R39L5_HUMAN :
  • Belongs to the eukaryotic ribosomal protein eL39 family.
Family:
  • Belongs to the eukaryotic ribosomal protein eL39 family.
genes like me logo Genes that share domains with RPL39P5: view

No data available for Gene Families for RPL39P5 Gene

Function for RPL39P5 Gene

Phenotypes From GWAS Catalog for RPL39P5 Gene

Gene Ontology (GO) - Molecular Function for RPL39P5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IBA --
GO:0003735 structural constituent of ribosome IBA --
genes like me logo Genes that share ontologies with RPL39P5: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL39P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P5 Gene

Localization for RPL39P5 Gene

Gene Ontology (GO) - Cellular Components for RPL39P5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0022625 cytosolic large ribosomal subunit IBA --
genes like me logo Genes that share ontologies with RPL39P5: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for RPL39P5 Gene

Pathways & Interactions for RPL39P5 Gene

SuperPathways for RPL39P5 Gene

No Data Available

Interacting Proteins for RPL39P5 Gene

Selected Interacting proteins: Q59GN2-R39L5_HUMAN for RPL39P5 Gene via IID

Gene Ontology (GO) - Biological Process for RPL39P5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IBA --
genes like me logo Genes that share ontologies with RPL39P5: view

No data available for Pathways by source and SIGNOR curated interactions for RPL39P5 Gene

Drugs & Compounds for RPL39P5 Gene

No Compound Related Data Available

Transcripts for RPL39P5 Gene

mRNA/cDNA for RPL39P5 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL39P5 Gene

Ribosomal protein L39 pseudogene 5:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL39P5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P5 Gene

No ASD Table

Relevant External Links for RPL39P5 Gene

GeneLoc Exon Structure for
RPL39P5
ECgene alternative splicing isoforms for
RPL39P5

Expression for RPL39P5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P5 Gene

Protein differential expression in normal tissues from HIPED for RPL39P5 Gene

This gene is overexpressed in Lung (26.6), Bone (11.3), Breast (11.1), Tlymphocyte (10.6), and Pancreas (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for RPL39P5 Gene



Protein tissue co-expression partners for RPL39P5 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P5 Gene:

RPL39P5

SOURCE GeneReport for Unigene cluster for RPL39P5 Gene:

Hs.611241
genes like me logo Genes that share expression patterns with RPL39P5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P5 Gene

Orthologs for RPL39P5 Gene

Evolution for RPL39P5 Gene

ENSEMBL:
Gene Tree for RPL39P5 (if available)
TreeFam:
Gene Tree for RPL39P5 (if available)

No data available for Orthologs for RPL39P5 Gene

Paralogs for RPL39P5 Gene

(2) SIMAP similar genes for RPL39P5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RPL39P5: view

No data available for Paralogs for RPL39P5 Gene

Variants for RPL39P5 Gene

Relevant External Links for RPL39P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P5 Gene

Disorders for RPL39P5 Gene

Relevant External Links for RPL39P5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL39P5

No disorders were found for RPL39P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL39P5 Gene

Publications for RPL39P5 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett EJ … Harper JW (Cell 2010) 3 60

Products for RPL39P5 Gene

Sources for RPL39P5 Gene

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