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Aliases for RPL39P40 Gene

Aliases for RPL39P40 Gene

  • Ribosomal Protein L39 Pseudogene 40 2 3 5
  • RPL39_21_1719 3

External Ids for RPL39P40 Gene

Previous GeneCards Identifiers for RPL39P40 Gene

  • GC21U900308
  • GC21M018873

Summaries for RPL39P40 Gene

GeneCards Summary for RPL39P40 Gene

RPL39P40 (Ribosomal Protein L39 Pseudogene 40) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P40 Gene

Genomics for RPL39P40 Gene

Regulatory Elements for RPL39P40 Gene

Enhancers for RPL39P40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G017510 1 ENCODE 5.9 -12.2 -12186 4.5 HNRNPUL1 ATF1 ARID4B SIN3A FEZF1 DMAP1 ZNF48 YY1 GTF3C2 ZNF121 RPL39P40 ENSG00000228798 CXADR BTF3L4P1
GH21G017501 1 ENCODE 0.7 -0.7 -715 0.2 PKNOX1 FOXA2 ATF1 MLX ARID4B FEZF1 DMAP1 BRCA1 GLIS2 FOS LINC01549 RPL39P40 RN7SL163P
GH21G017502 0.9 ENCODE 0.7 -0.4 -445 0.2 FOXA2 ATF1 ZSCAN4 DMAP1 ZSCAN9 GLIS2 ZNF391 CREM KLF11 SP3 LINC01549 RPL39P40 RN7SL163P
GH21G017491 0.9 Ensembl ENCODE 0.4 +8.6 8569 1.8 STAT1 JUN EP300 ATF2 JUND ATF3 STAT3 CREB1 FOS NFE2 CXADR LINC01549 RPL39P40 TRG-GCC1-5
GH21G017460 1.2 Ensembl ENCODE 0.3 +38.4 38448 3.6 FOXA2 ARID4B DMAP1 ZNF48 YY1 GATA2 FOS SP5 PPARG MEF2D LINC01549 TRG-GCC1-5 RPL39P40
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL39P40 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL39P40 Gene

Chromosome:
21
Start:
17,500,480 bp from pter
End:
17,500,873 bp from pter
Size:
394 bases
Orientation:
Minus strand

Genomic View for RPL39P40 Gene

Genes around RPL39P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P40 Gene

Proteins for RPL39P40 Gene

Post-translational modifications for RPL39P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P40 Gene

Domains & Families for RPL39P40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P40 Gene

Function for RPL39P40 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P40 Gene

Localization for RPL39P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL39P40 Gene

Pathways & Interactions for RPL39P40 Gene

SuperPathways for RPL39P40 Gene

No Data Available

Interacting Proteins for RPL39P40 Gene

Gene Ontology (GO) - Biological Process for RPL39P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P40 Gene

Drugs & Compounds for RPL39P40 Gene

No Compound Related Data Available

Transcripts for RPL39P40 Gene

mRNA/cDNA for RPL39P40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P40 Gene

No ASD Table

Relevant External Links for RPL39P40 Gene

GeneLoc Exon Structure for
RPL39P40
ECgene alternative splicing isoforms for
RPL39P40

Expression for RPL39P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P40 Gene

mRNA differential expression in normal tissues according to GTEx for RPL39P40 Gene

This gene is overexpressed in Heart - Left Ventricle (x6.0), Liver (x4.3), and Brain - Spinal cord (cervical c-1) (x4.0).

NURSA nuclear receptor signaling pathways regulating expression of RPL39P40 Gene:

RPL39P40
genes like me logo Genes that share expression patterns with RPL39P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P40 Gene

Orthologs for RPL39P40 Gene

Evolution for RPL39P40 Gene

ENSEMBL:
Gene Tree for RPL39P40 (if available)
TreeFam:
Gene Tree for RPL39P40 (if available)

No data available for Orthologs for RPL39P40 Gene

Paralogs for RPL39P40 Gene

No data available for Paralogs for RPL39P40 Gene

Variants for RPL39P40 Gene

Relevant External Links for RPL39P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P40 Gene

Disorders for RPL39P40 Gene

No disorders were found for RPL39P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P40 Gene

Publications for RPL39P40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL39P40 Gene

Sources for RPL39P40 Gene

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