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Aliases for RPL39P3 Gene

Aliases for RPL39P3 Gene

  • Ribosomal Protein L39 Pseudogene 3 2 3 5
  • RPL39_9_712 3

External Ids for RPL39P3 Gene

Previous GeneCards Identifiers for RPL39P3 Gene

  • GC06U900339
  • GC06M074078
  • GC06M074139
  • GC06M074083

Summaries for RPL39P3 Gene

GeneCards Summary for RPL39P3 Gene

RPL39P3 (Ribosomal Protein L39 Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P3 Gene

Genomics for RPL39P3 Gene

Regulatory Elements for RPL39P3 Gene

Enhancers for RPL39P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F073421 1 Ensembl ENCODE 11.3 -49.1 -49125 2.0 TBP HDAC1 PKNOX1 CBX3 ATF1 CREM ZBTB11 CREB3 SMARCA4 HMBOX1 OOEP DDX43 RPS6P8 RPL39P3 OOEP-AS1 MB21D1
GH06F073348 0.5 ENCODE 11.2 +24.0 23975 2.2 BCL11A POU5F1 KDM1A OOEP-AS1 RPL39P3 OOEP KHDC1 RPS6P8 DDX43 MTO1 SLC17A5 DPPA5 PAICSP3
GH06F073652 0.6 ENCODE 10.7 -280.9 -280873 3.3 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 KLF13 SP3 SLC17A5 LOC101928489 RPL39P3 GC06M073661
GH06F072561 0.6 ENCODE 10.7 +811.6 811553 0.8 ATF1 PKNOX1 ARNT CREB3L1 ELK1 GATA2 NCOA1 SMARCB1 MBD2 MEF2D RPL39P3 GC06P072583 LOC100422453
GH06F073460 0.2 ENCODE 10.3 -88.5 -88522 2.5 PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF263 SP3 SLC17A5 EIF3EP1 KHDC1 DDX43 OOEP RPL39P3 MTO1 RNU6-975P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL39P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL39P3 Gene

Chromosome:
6
Start:
73,372,930 bp from pter
End:
73,373,313 bp from pter
Size:
384 bases
Orientation:
Minus strand

Genomic View for RPL39P3 Gene

Genes around RPL39P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P3 Gene

Proteins for RPL39P3 Gene

Post-translational modifications for RPL39P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P3 Gene

Domains & Families for RPL39P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P3 Gene

Function for RPL39P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P3 Gene

Localization for RPL39P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL39P3 Gene

Pathways & Interactions for RPL39P3 Gene

SuperPathways for RPL39P3 Gene

No Data Available

Interacting Proteins for RPL39P3 Gene

Gene Ontology (GO) - Biological Process for RPL39P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P3 Gene

Transcripts for RPL39P3 Gene

mRNA/cDNA for RPL39P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P3 Gene

No ASD Table

Relevant External Links for RPL39P3 Gene

GeneLoc Exon Structure for
RPL39P3
ECgene alternative splicing isoforms for
RPL39P3

Expression for RPL39P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL39P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P3 Gene:

RPL39P3
genes like me logo Genes that share expression patterns with RPL39P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL39P3 Gene

Orthologs for RPL39P3 Gene

Evolution for RPL39P3 Gene

ENSEMBL:
Gene Tree for RPL39P3 (if available)
TreeFam:
Gene Tree for RPL39P3 (if available)

No data available for Orthologs for RPL39P3 Gene

Paralogs for RPL39P3 Gene

No data available for Paralogs for RPL39P3 Gene

Variants for RPL39P3 Gene

Relevant External Links for RPL39P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P3 Gene

Disorders for RPL39P3 Gene

No disorders were found for RPL39P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P3 Gene

Publications for RPL39P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64
  3. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for RPL39P3 Gene

Sources for RPL39P3 Gene

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