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Aliases for RPL39P28 Gene

Aliases for RPL39P28 Gene

  • Ribosomal Protein L39 Pseudogene 28 2 3 5
  • RPL39_14_1253 3

External Ids for RPL39P28 Gene

Previous GeneCards Identifiers for RPL39P28 Gene

  • GC12U901049
  • GC12M068396

Summaries for RPL39P28 Gene

GeneCards Summary for RPL39P28 Gene

RPL39P28 (Ribosomal Protein L39 Pseudogene 28) is a Pseudogene.

Additional gene information for RPL39P28 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P28 Gene

Genomics for RPL39P28 Gene

Regulatory Elements for RPL39P28 Gene

Enhancers for RPL39P28 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H067988 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.7 10720 4 PKNOX1 EBF1 BATF RELA GATA3 POLR2A EED ATF7 RUNX3 IKZF2 IFNG-AS1 LINC01479 IFNG IL22 DYRK2 RPL39P28
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL39P28 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL39P28 Gene

Chromosome:
12
Start:
68,001,394 bp from pter
End:
68,001,548 bp from pter
Size:
155 bases
Orientation:
Minus strand

Genomic View for RPL39P28 Gene

Genes around RPL39P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P28 Gene

Proteins for RPL39P28 Gene

Post-translational modifications for RPL39P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P28 Gene

Domains & Families for RPL39P28 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P28 Gene

Function for RPL39P28 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL39P28
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P28 Gene

Localization for RPL39P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P28 Gene

Pathways & Interactions for RPL39P28 Gene

SuperPathways for RPL39P28 Gene

No Data Available

Interacting Proteins for RPL39P28 Gene

Gene Ontology (GO) - Biological Process for RPL39P28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P28 Gene

Drugs & Compounds for RPL39P28 Gene

No Compound Related Data Available

Transcripts for RPL39P28 Gene

mRNA/cDNA for RPL39P28 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL39P28
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P28 Gene

No ASD Table

Relevant External Links for RPL39P28 Gene

GeneLoc Exon Structure for
RPL39P28
ECgene alternative splicing isoforms for
RPL39P28

Expression for RPL39P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P28 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P28 Gene:

RPL39P28
genes like me logo Genes that share expression patterns with RPL39P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P28 Gene

Orthologs for RPL39P28 Gene

Evolution for RPL39P28 Gene

ENSEMBL:
Gene Tree for RPL39P28 (if available)
TreeFam:
Gene Tree for RPL39P28 (if available)

No data available for Orthologs for RPL39P28 Gene

Paralogs for RPL39P28 Gene

No data available for Paralogs for RPL39P28 Gene

Variants for RPL39P28 Gene

Relevant External Links for RPL39P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P28 Gene

Disorders for RPL39P28 Gene

Relevant External Links for RPL39P28

Genetic Association Database (GAD)
RPL39P28

No disorders were found for RPL39P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL39P28 Gene

Publications for RPL39P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47. (PMID: 21297633) Anderson CA … Rioux JD (Nature genetics 2011) 45 60
  3. Genome-wide association identifies multiple ulcerative colitis susceptibility loci. (PMID: 20228799) McGovern DP … Seielstad M (Nature genetics 2010) 45 60
  4. Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study. (PMID: 19122664) Silverberg MS … Duerr RH (Nature genetics 2009) 45 60

Products for RPL39P28 Gene

Sources for RPL39P28 Gene

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