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Aliases for RPL39P25 Gene

Aliases for RPL39P25 Gene

  • Ribosomal Protein L39 Pseudogene 25 2 3 5
  • RPL39_11_1067 3

External Ids for RPL39P25 Gene

Previous GeneCards Identifiers for RPL39P25 Gene

  • GC10U901110
  • GC10M077030

Summaries for RPL39P25 Gene

GeneCards Summary for RPL39P25 Gene

RPL39P25 (Ribosomal Protein L39 Pseudogene 25) is a Pseudogene.

Additional gene information for RPL39P25 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P25 Gene

Genomics for RPL39P25 Gene

GeneHancer (GH) Regulatory Elements for RPL39P25 Gene

Promoters and enhancers for RPL39P25 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I075243 Enhancer 1 ENCODE dbSUPER 13.5 +23.8 23760 4.7 HDAC1 KLF17 ZEB2 ZNF217 SMARCA4 IKZF1 HNF4A KDM1A ZBTB33 ZNF24 ZNF503-AS1 RPL39P25 HMGA1P5 DUSP13 DUPD1 COMTD1
GH10I075238 Enhancer 0.7 FANTOM5 13.4 +31.2 31231 0.4 USF1 ZNF792 SAP130 PYGO2 ZNF48 RARA ZNF316 NR2F6 L3MBTL2 NFYC ZNF503-AS1 RPL39P25 HMGA1P5 DUPD1 COMTD1 VDAC2
GH10I075240 Enhancer 0.6 ENCODE dbSUPER 13.4 +29.0 28971 1.2 ZNF624 ZNF18 RPL39P25 ZNF503-AS1 HMGA1P5 DUPD1 COMTD1
GH10I075261 Enhancer 1.7 VISTA UCNEbase ENCODE dbSUPER 0.4 +6.8 6783 2.7 BCOR ESRRA PKNOX1 ZMYM3 ZIC2 FOSL1 CTBP1 GATA3 SMARCA5 SMARCE1 ZNF503-AS1 HMGA1P5 RPL39P25 COMTD1
GH10I075252 Enhancer 0.8 ENCODE dbSUPER 0.4 +16.2 16211 1.3 SMARCA5 ZNF146 ZNF529 ZNF518A ZNF280A ZSCAN21 ZNF664 ZNF274 ZNF585B ZSCAN5C ZNF503-AS1 KAT6B COMTD1 RPL39P25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL39P25 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL39P25 Gene

Genomic Locations for RPL39P25 Gene
chr10:75,269,200-75,269,594
(GRCh38/hg38)
Size:
395 bases
Orientation:
Minus strand
chr10:77,029,150-77,029,303
(GRCh37/hg19)

Genomic View for RPL39P25 Gene

Genes around RPL39P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P25 Gene

Proteins for RPL39P25 Gene

Post-translational modifications for RPL39P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P25 Gene

Domains & Families for RPL39P25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P25 Gene

Function for RPL39P25 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P25 Gene

Localization for RPL39P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P25 Gene

Pathways & Interactions for RPL39P25 Gene

SuperPathways for RPL39P25 Gene

No Data Available

Interacting Proteins for RPL39P25 Gene

Gene Ontology (GO) - Biological Process for RPL39P25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P25 Gene

Drugs & Compounds for RPL39P25 Gene

No Compound Related Data Available

Transcripts for RPL39P25 Gene

mRNA/cDNA for RPL39P25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P25 Gene

No ASD Table

Relevant External Links for RPL39P25 Gene

GeneLoc Exon Structure for
RPL39P25
ECgene alternative splicing isoforms for
RPL39P25

Expression for RPL39P25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P25 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P25 Gene:

RPL39P25
genes like me logo Genes that share expression patterns with RPL39P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P25 Gene

Orthologs for RPL39P25 Gene

Evolution for RPL39P25 Gene

ENSEMBL:
Gene Tree for RPL39P25 (if available)
TreeFam:
Gene Tree for RPL39P25 (if available)

No data available for Orthologs for RPL39P25 Gene

Paralogs for RPL39P25 Gene

No data available for Paralogs for RPL39P25 Gene

Variants for RPL39P25 Gene

Additional Variant Information for RPL39P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P25 Gene

Disorders for RPL39P25 Gene

No disorders were found for RPL39P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P25 Gene

Publications for RPL39P25 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL39P25 Gene

Sources for RPL39P25 Gene

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