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Aliases for RPL39P25 Gene

Aliases for RPL39P25 Gene

  • Ribosomal Protein L39 Pseudogene 25 2 3 5
  • RPL39_11_1067 3

External Ids for RPL39P25 Gene

Previous GeneCards Identifiers for RPL39P25 Gene

  • GC10U901110
  • GC10M077030

Summaries for RPL39P25 Gene

GeneCards Summary for RPL39P25 Gene

RPL39P25 (Ribosomal Protein L39 Pseudogene 25) is a Pseudogene.

Additional gene information for RPL39P25 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P25 Gene

Genomics for RPL39P25 Gene

Regulatory Elements for RPL39P25 Gene

Enhancers for RPL39P25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H075243 1.1 ENCODE dbSUPER 13.4 +23.8 23761 4 BCOR ESRRA TAL1 KLF17 ZIC2 E2F1 MTA3 GATA3 CTBP1 FOXK2 ZNF503-AS1 RPL39P25 HMGA1P5 DUSP13 DUPD1 COMTD1
GH10H075238 0.8 FANTOM5 13.4 +31.2 31232 0 SAP130 L3MBTL2 ZNF792 NFYC RARA ZNF592 ZNF316 ZKSCAN8 NR2C1 ZBTB33 ZNF503-AS1 RPL39P25 HMGA1P5 DUPD1 COMTD1 VDAC2
GH10H075240 0.7 ENCODE dbSUPER 13.4 +29.0 28971 1 ZNF624 ZNF18 RPL39P25 ZNF503-AS1 HMGA1P5 DUPD1 COMTD1
GH10H075261 2.5 VISTA ENCODE dbSUPER 0.4 +6.8 6784 2 BCOR PKNOX1 ESRRA ZMYM3 ZIC2 FOSL1 CTBP1 GATA3 GATAD2A SMARCE1 ZNF503-AS1 HMGA1P5 RPL39P25 COMTD1
GH10H075252 0.9 ENCODE dbSUPER 0.4 +16.2 16212 1 SMARCA5 ZNF146 ZNF518A ZSCAN21 ZNF664 ZNF274 ZNF585B ZSCAN5C ZNF580 TRIM24 ZNF503-AS1 KAT6B RPL39P25 COMTD1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL39P25 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL39P25 Gene

Chromosome:
10
Start:
75,269,200 bp from pter
End:
75,269,594 bp from pter
Size:
395 bases
Orientation:
Minus strand

Genomic View for RPL39P25 Gene

Genes around RPL39P25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P25 Gene

Proteins for RPL39P25 Gene

Post-translational modifications for RPL39P25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P25 Gene

Domains & Families for RPL39P25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P25 Gene

Function for RPL39P25 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL39P25
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P25 Gene

Localization for RPL39P25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P25 Gene

Pathways & Interactions for RPL39P25 Gene

SuperPathways for RPL39P25 Gene

No Data Available

Interacting Proteins for RPL39P25 Gene

Gene Ontology (GO) - Biological Process for RPL39P25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P25 Gene

Drugs & Compounds for RPL39P25 Gene

No Compound Related Data Available

Transcripts for RPL39P25 Gene

mRNA/cDNA for RPL39P25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL39P25
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P25 Gene

No ASD Table

Relevant External Links for RPL39P25 Gene

GeneLoc Exon Structure for
RPL39P25
ECgene alternative splicing isoforms for
RPL39P25

Expression for RPL39P25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P25 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P25 Gene:

RPL39P25
genes like me logo Genes that share expression patterns with RPL39P25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P25 Gene

Orthologs for RPL39P25 Gene

Evolution for RPL39P25 Gene

ENSEMBL:
Gene Tree for RPL39P25 (if available)
TreeFam:
Gene Tree for RPL39P25 (if available)

No data available for Orthologs for RPL39P25 Gene

Paralogs for RPL39P25 Gene

No data available for Paralogs for RPL39P25 Gene

Variants for RPL39P25 Gene

Relevant External Links for RPL39P25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P25 Gene

Disorders for RPL39P25 Gene

No disorders were found for RPL39P25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P25 Gene

Publications for RPL39P25 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPL39P25 Gene

Sources for RPL39P25 Gene

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