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Aliases for RPL39P16 Gene

Aliases for RPL39P16 Gene

  • Ribosomal Protein L39 Pseudogene 16 2 3
  • RPL39_5_258 3
  • AC073415.2 5

External Ids for RPL39P16 Gene

Previous GeneCards Identifiers for RPL39P16 Gene

  • GC02U901655
  • GC02P109495

Summaries for RPL39P16 Gene

GeneCards Summary for RPL39P16 Gene

RPL39P16 (Ribosomal Protein L39 Pseudogene 16) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P16 Gene

Genomics for RPL39P16 Gene

Regulatory Elements for RPL39P16 Gene

Enhancers for RPL39P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F108890 0.3 FANTOM5 0.4 +11.8 11843 0.2 SETDB1 EDAR CCDC138 LIMS1 PIR52808 RPL39P16
GH02F108833 0.6 Ensembl 0.2 -45.0 -45008 0.2 ELF3 ARID4B RAD21 RARA MIXL1 THAP11 PPARG KAT8 MIER3 KLF16 CCDC138 RPL39P16
GH02F108785 0.6 ENCODE 0.1 -91.5 -91515 2.3 PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 PAF1 GCC2 LIMS1 CCDC138 RPL39P16
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL39P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL39P16 Gene

Chromosome:
2
Start:
108,878,308 bp from pter
End:
108,878,463 bp from pter
Size:
156 bases
Orientation:
Plus strand

Genomic View for RPL39P16 Gene

Genes around RPL39P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P16 Gene

Proteins for RPL39P16 Gene

Post-translational modifications for RPL39P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P16 Gene

Domains & Families for RPL39P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P16 Gene

Function for RPL39P16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P16 Gene

Localization for RPL39P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL39P16 Gene

Pathways & Interactions for RPL39P16 Gene

SuperPathways for RPL39P16 Gene

No Data Available

Interacting Proteins for RPL39P16 Gene

Gene Ontology (GO) - Biological Process for RPL39P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P16 Gene

Transcripts for RPL39P16 Gene

mRNA/cDNA for RPL39P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P16 Gene

No ASD Table

Relevant External Links for RPL39P16 Gene

GeneLoc Exon Structure for
RPL39P16
ECgene alternative splicing isoforms for
RPL39P16

Expression for RPL39P16 Gene

mRNA expression in normal human tissues for RPL39P16 Gene

mRNA differential expression in normal tissues according to GTEx for RPL39P16 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.4) and Brain - Cerebellum (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of RPL39P16 Gene:

RPL39P16
genes like me logo Genes that share expression patterns with RPL39P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL39P16 Gene

Orthologs for RPL39P16 Gene

Evolution for RPL39P16 Gene

ENSEMBL:
Gene Tree for RPL39P16 (if available)
TreeFam:
Gene Tree for RPL39P16 (if available)

No data available for Orthologs for RPL39P16 Gene

Paralogs for RPL39P16 Gene

No data available for Paralogs for RPL39P16 Gene

Variants for RPL39P16 Gene

Relevant External Links for RPL39P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P16 Gene

Disorders for RPL39P16 Gene

No disorders were found for RPL39P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P16 Gene

Publications for RPL39P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL39P16 Gene

Sources for RPL39P16 Gene

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