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Aliases for RPL39P13 Gene

Aliases for RPL39P13 Gene

  • Ribosomal Protein L39 Pseudogene 13 2 3
  • RP11-91I11.1 5
  • RPL39_3_72 3

External Ids for RPL39P13 Gene

Previous GeneCards Identifiers for RPL39P13 Gene

  • GC01P091840
  • GC01P092066

Summaries for RPL39P13 Gene

GeneCards Summary for RPL39P13 Gene

RPL39P13 (Ribosomal Protein L39 Pseudogene 13) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P13 Gene

Genomics for RPL39P13 Gene

Regulatory Elements for RPL39P13 Gene

Enhancers for RPL39P13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F091568 1.5 FANTOM5 Ensembl ENCODE 0.3 -29.2 -29221 3.8 PKNOX1 TBL1XR1 BMI1 ZNF366 ETV6 CREM EGR2 SMARCA5 ZBTB2 CEBPB LOC102723436 RPL39P13
GH01F091590 1.1 Ensembl ENCODE 0.4 -8.5 -8511 1.6 ATF1 CBX3 NCOA1 CEBPB ZEB2 TFDP1 MAFF ZNF589 SMARCA4 NBN RPL39P13 LOC102723436
GH01F091581 1.3 FANTOM5 Ensembl ENCODE 0.3 -17.0 -16973 2.7 KLF1 BHLHE40 USF2 ZEB2 ELF1 ZIC2 RAD51 JUND ZSCAN16 NFYB CDC7 LOC102723436 RPL39P13
GH01F091585 0.5 Ensembl 0.4 -14.4 -14412 1.0 GLIS1 ZIC2 SPI1 RPL39P13 LOC102723436
GH01F091575 0.5 ENCODE 0.3 -25.0 -24974 0.2 ARID1B PKNOX1 IKZF1 LOC102723436 RPL39P13
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL39P13 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL39P13 Gene

Chromosome:
1
Start:
91,600,112 bp from pter
End:
91,600,504 bp from pter
Size:
393 bases
Orientation:
Plus strand

Genomic View for RPL39P13 Gene

Genes around RPL39P13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P13 Gene

Proteins for RPL39P13 Gene

Post-translational modifications for RPL39P13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P13 Gene

Domains & Families for RPL39P13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P13 Gene

Function for RPL39P13 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P13 Gene

Localization for RPL39P13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL39P13 Gene

Pathways & Interactions for RPL39P13 Gene

SuperPathways for RPL39P13 Gene

No Data Available

Interacting Proteins for RPL39P13 Gene

Gene Ontology (GO) - Biological Process for RPL39P13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P13 Gene

Transcripts for RPL39P13 Gene

mRNA/cDNA for RPL39P13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P13 Gene

No ASD Table

Relevant External Links for RPL39P13 Gene

GeneLoc Exon Structure for
RPL39P13
ECgene alternative splicing isoforms for
RPL39P13

Expression for RPL39P13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL39P13 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL39P13 Gene:

RPL39P13
genes like me logo Genes that share expression patterns with RPL39P13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL39P13 Gene

Orthologs for RPL39P13 Gene

Evolution for RPL39P13 Gene

ENSEMBL:
Gene Tree for RPL39P13 (if available)
TreeFam:
Gene Tree for RPL39P13 (if available)

No data available for Orthologs for RPL39P13 Gene

Paralogs for RPL39P13 Gene

No data available for Paralogs for RPL39P13 Gene

Variants for RPL39P13 Gene

Relevant External Links for RPL39P13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P13 Gene

Disorders for RPL39P13 Gene

Relevant External Links for RPL39P13

Genetic Association Database (GAD)
RPL39P13

No disorders were found for RPL39P13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL39P13 Gene

Publications for RPL39P13 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association studies in Asians confirm the involvement of ATOH7 and TGFBR3, and further identify CARD10 as a novel locus influencing optic disc area. (PMID: 21307088) Khor C.C. … Aung T. (Hum. Mol. Genet. 2011) 46 64
  3. Genome-wide association identifies ATOH7 as a major gene determining human optic disc size. (PMID: 20395239) Macgregor S. … Mackey D.A. (Hum. Mol. Genet. 2010) 46 64
  4. A genome-wide association study of optic disc parameters. (PMID: 20548946) Ramdas W.D. … van Duijn C.M. (PLoS Genet. 2010) 46 64

Products for RPL39P13 Gene

Sources for RPL39P13 Gene

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