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Aliases for RPL39P Gene

Aliases for RPL39P Gene

  • Ribosomal Protein L39 Pseudogene 2 3
  • RPL39_20_1715 3
  • DJ1167H4.5 3
  • AL121914.1 5

External Ids for RPL39P Gene

Previous GeneCards Identifiers for RPL39P Gene

  • GC20U990130
  • GC20M055672
  • GC20M055719
  • GC20M054467
  • GC20M055035
  • GC20M051819

Summaries for RPL39P Gene

GeneCards Summary for RPL39P Gene

RPL39P (Ribosomal Protein L39 Pseudogene) is a Pseudogene.

Additional gene information for RPL39P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL39P Gene

Genomics for RPL39P Gene

Regulatory Elements for RPL39P Gene

Enhancers for RPL39P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H056408 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.2 +42.5 42518 17 HNRNPUL1 PKNOX1 FOXA2 ARNT ZFP64 YBX1 YY1 ZNF766 CBX5 FOS CASS4 RTFDC1 RPL39P CSTF1 ENSG00000280387 FAM210B GCNT7 FAM209B
GH20H056432 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +25.3 25328 3.8 ZFHX2 EGR1 ZMYM3 ZNF24 MAFK SPI1 EGR2 CASS4 RTFDC1 RPL39P
GH20H056426 1.4 Ensembl ENCODE dbSUPER 11.6 +30.7 30706 5.8 HDAC1 TBL1XR1 TCF12 GATA2 EGR1 FOS ETV6 CREM EGR2 SMARCA5 CASS4 RTFDC1 RPL39P FAM209A FAM210B
GH20H056483 0.9 Ensembl ENCODE dbSUPER 11 -24.3 -24301 1.3 CTCF GABPA FAM209A RPL39P CSTF1 AURKA FAM210B LOC105372681 RTFDC1
GH20H056436 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +18.8 18761 8.4 PKNOX1 FOXA2 TBL1XR1 EBF1 RELA E2F1 GATA3 POLR2A EED SCRT2 CASS4 RTFDC1 FAM209A RPL39P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL39P on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL39P Gene

Genomic Locations for RPL39P Gene
chr20:56,459,235-56,459,632
(GRCh38/hg38)
Size:
398 bases
Orientation:
Minus strand
chr20:55,034,291-55,034,688
(GRCh37/hg19)

Genomic View for RPL39P Gene

Genes around RPL39P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL39P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL39P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL39P Gene

Proteins for RPL39P Gene

Post-translational modifications for RPL39P Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL39P Gene

Domains & Families for RPL39P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL39P Gene

Function for RPL39P Gene

Phenotypes From GWAS Catalog for RPL39P Gene

Phenotypes for RPL39P Gene

GenomeRNAi human phenotypes for RPL39P:
genes like me logo Genes that share phenotypes with RPL39P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL39P Gene

Localization for RPL39P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL39P Gene

Pathways & Interactions for RPL39P Gene

SuperPathways for RPL39P Gene

No Data Available

Interacting Proteins for RPL39P Gene

Gene Ontology (GO) - Biological Process for RPL39P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL39P Gene

Drugs & Compounds for RPL39P Gene

No Compound Related Data Available

Transcripts for RPL39P Gene

mRNA/cDNA for RPL39P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL39P Gene

No ASD Table

Relevant External Links for RPL39P Gene

GeneLoc Exon Structure for
RPL39P
ECgene alternative splicing isoforms for
RPL39P

Expression for RPL39P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL39P Gene

mRNA differential expression in normal tissues according to GTEx for RPL39P Gene

This gene is overexpressed in Whole Blood (x10.9) and Lung (x10.5).

NURSA nuclear receptor signaling pathways regulating expression of RPL39P Gene:

RPL39P
genes like me logo Genes that share expression patterns with RPL39P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL39P Gene

Orthologs for RPL39P Gene

Evolution for RPL39P Gene

ENSEMBL:
Gene Tree for RPL39P (if available)
TreeFam:
Gene Tree for RPL39P (if available)

No data available for Orthologs for RPL39P Gene

Paralogs for RPL39P Gene

No data available for Paralogs for RPL39P Gene

Variants for RPL39P Gene

Relevant External Links for RPL39P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL39P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL39P Gene

Disorders for RPL39P Gene

No disorders were found for RPL39P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL39P Gene

Publications for RPL39P Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60

Products for RPL39P Gene

Sources for RPL39P Gene

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