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Aliases for RPL36P16 Gene

Subcategory (RNA class) for RPL36P16 Gene

lncRNA

Aliases for RPL36P16 Gene

  • Ribosomal Protein L36 Pseudogene 16 2 3 5
  • RPL36_7_1657 3

External Ids for RPL36P16 Gene

ORGUL Members for RPL36P16 Gene

Previous GeneCards Identifiers for RPL36P16 Gene

  • GC19U901015
  • GC19P041677

Summaries for RPL36P16 Gene

GeneCards Summary for RPL36P16 Gene

RPL36P16 (Ribosomal Protein L36 Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL36P16 Gene

Genomics for RPL36P16 Gene

Regulatory Elements for RPL36P16 Gene

Enhancers for RPL36P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F041172 0.9 Ensembl ENCODE 0.8 +4.9 4886 5.5 ELF3 PKNOX1 KLF17 SIN3A SLC30A9 SCRT2 FOS CREM THAP11 ZNF263 CYP2S1 AXL CYP2F1 ATP5SL PCAT19 RPL36P16 GC19P041185
GH19F041165 0.2 ENCODE 0.8 -3.2 -3183 2.9 ELF3 ZFP64 RARA GTF3C2 GATA4 POLR3A CREM REST PPARG ZNF518A ITPKC SNRPA CCDC97 ZNF574 RPL36P16 PIR51429
GH19F041161 0.8 ENCODE 0.4 -8.4 -8371 0.2 RPL36P16 PIR51429
GH19F041162 0.2 ENCODE 0.4 -7.8 -7791 0.2 CTCF IKZF1 CHD4 ZMYM3 RPL36P16 PIR51429
GH19F041183 0.2 Ensembl 0.4 +13.6 13640 0.2 ATF3 ZNF366 HLF ATF2 ZBTB20 GC19P041185 RPL36P16
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL36P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL36P16 Gene

Chromosome:
19
Start:
41,169,861 bp from pter
End:
41,170,166 bp from pter
Size:
306 bases
Orientation:
Plus strand

Genomic View for RPL36P16 Gene

Genes around RPL36P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL36P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL36P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36P16 Gene

Proteins for RPL36P16 Gene

Post-translational modifications for RPL36P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL36P16 Gene

Domains & Families for RPL36P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL36P16 Gene

Function for RPL36P16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL36P16 Gene

Localization for RPL36P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL36P16 Gene

Pathways & Interactions for RPL36P16 Gene

SuperPathways for RPL36P16 Gene

No Data Available

Interacting Proteins for RPL36P16 Gene

Gene Ontology (GO) - Biological Process for RPL36P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL36P16 Gene

Transcripts for RPL36P16 Gene

mRNA/cDNA for RPL36P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36P16 Gene

No ASD Table

Relevant External Links for RPL36P16 Gene

GeneLoc Exon Structure for
RPL36P16
ECgene alternative splicing isoforms for
RPL36P16

Expression for RPL36P16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL36P16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL36P16 Gene:

RPL36P16
genes like me logo Genes that share expression patterns with RPL36P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL36P16 Gene

Orthologs for RPL36P16 Gene

Evolution for RPL36P16 Gene

ENSEMBL:
Gene Tree for RPL36P16 (if available)
TreeFam:
Gene Tree for RPL36P16 (if available)

No data available for Orthologs for RPL36P16 Gene

Paralogs for RPL36P16 Gene

No data available for Paralogs for RPL36P16 Gene

Variants for RPL36P16 Gene

Relevant External Links for RPL36P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL36P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL36P16 Gene

Disorders for RPL36P16 Gene

No disorders were found for RPL36P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL36P16 Gene

Publications for RPL36P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Analysis of CYP2A contributions to metabolism of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone in human peripheral lung microsomes. (PMID: 17717079) Brown P.J. … Massey T.E. (Drug Metab. Dispos. 2007) 3 64
  3. Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants. (PMID: 15128046) Nelson D.R. … Nebert D.W. (Pharmacogenetics 2004) 3 64
  4. Association of CYP2A6 deletion polymorphism with smoking habit and development of pulmonary emphysema. (PMID: 12832682) Minematsu N. … Yamaguchi K. (Thorax 2003) 3 64
  5. Identification and tissue distribution of the novel human cytochrome P450 2S1 (CYP2S1). (PMID: 11181079) Rylander T. … Oscarson M. (Biochem. Biophys. Res. Commun. 2001) 3 64

Products for RPL36P16 Gene

Sources for RPL36P16 Gene

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