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Aliases for RPL36AP45 Gene

Subcategory (RNA class) for RPL36AP45 Gene

lncRNA

Aliases for RPL36AP45 Gene

  • Ribosomal Protein L36a Pseudogene 45 2 3
  • RPL36A_20_1453 3
  • AC113208.1 5

External Ids for RPL36AP45 Gene

ORGUL Members for RPL36AP45 Gene

Previous GeneCards Identifiers for RPL36AP45 Gene

  • GC15U901018
  • GC15M075479

Summaries for RPL36AP45 Gene

GeneCards Summary for RPL36AP45 Gene

RPL36AP45 (Ribosomal Protein L36a Pseudogene 45) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL36AP45 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL36AP45 Gene

Genomics for RPL36AP45 Gene

Regulatory Elements for RPL36AP45 Gene

Enhancers for RPL36AP45 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H075181 1.3 Ensembl ENCODE dbSUPER 0.7 +4.5 4540 1 CTCF SOX13 ZSCAN5A KLF1 FOXA2 SAP130 ZFP64 ARID4B DMAP1 ZSCAN9 RPP25 C15orf39 RPL36AP45 GC15M075020
GH15H075177 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.2 8216 2 ARID4B RARA ATF7 SP5 CEBPB REST KAT8 TFDP1 NFIL3 ZNF589 RPP25 MAN2C1 C15orf39 CSK SIN3A RPL36AP45 GC15M075020
GH15H075180 1.3 Ensembl ENCODE dbSUPER 0.4 +6.3 6273 0 PKNOX1 ARNT ZSCAN4 FEZF1 ZNF384 BCL11B TCF12 ZFHX2 GATA3 CTBP1 SIN3A MAN2C1 LOC101929333 ENSG00000260274 CLK3 UBL7-AS1 SCAMP2 RPP25 RPL36AP45 GC15M075020
GH15H075175 1.3 Ensembl ENCODE dbSUPER 0.4 +10.9 10882 1 HDAC1 GTF2F1 ELF3 TBP ZMYM3 MAX CEBPG ZKSCAN1 ZNF121 RBAK FBXO22 DNM1P35 MAN2C1 ENSG00000203392 PPCDC RPL36AP45 GC15M075020
GH15H075170 1.1 Ensembl ENCODE 0.4 +15.5 15474 1 BCOR NFIB JUN ETV1 ZNF175 ZMYM3 BATF ZIC2 FOSL1 CTBP1 C15orf39 PPCDC SNUPN RPP25 ENSG00000260274 RPL36AP45 GC15M075020
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL36AP45 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL36AP45 Gene

Chromosome:
15
Start:
75,186,651 bp from pter
End:
75,186,968 bp from pter
Size:
318 bases
Orientation:
Minus strand

Genomic View for RPL36AP45 Gene

Genes around RPL36AP45 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL36AP45 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL36AP45 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36AP45 Gene

Proteins for RPL36AP45 Gene

Post-translational modifications for RPL36AP45 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL36AP45 Gene

Domains & Families for RPL36AP45 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL36AP45 Gene

Function for RPL36AP45 Gene

Phenotypes From GWAS Catalog for RPL36AP45 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL36AP45
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL36AP45 Gene

Localization for RPL36AP45 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL36AP45 Gene

Pathways & Interactions for RPL36AP45 Gene

SuperPathways for RPL36AP45 Gene

No Data Available

Interacting Proteins for RPL36AP45 Gene

Gene Ontology (GO) - Biological Process for RPL36AP45 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL36AP45 Gene

Drugs & Compounds for RPL36AP45 Gene

No Compound Related Data Available

Transcripts for RPL36AP45 Gene

mRNA/cDNA for RPL36AP45 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL36AP45
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36AP45 Gene

No ASD Table

Relevant External Links for RPL36AP45 Gene

GeneLoc Exon Structure for
RPL36AP45
ECgene alternative splicing isoforms for
RPL36AP45

Expression for RPL36AP45 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL36AP45 Gene

mRNA differential expression in normal tissues according to GTEx for RPL36AP45 Gene

This gene is overexpressed in Whole Blood (x5.1) and Testis (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of RPL36AP45 Gene:

RPL36AP45
genes like me logo Genes that share expression patterns with RPL36AP45: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL36AP45 Gene

Orthologs for RPL36AP45 Gene

Evolution for RPL36AP45 Gene

ENSEMBL:
Gene Tree for RPL36AP45 (if available)
TreeFam:
Gene Tree for RPL36AP45 (if available)

No data available for Orthologs for RPL36AP45 Gene

Paralogs for RPL36AP45 Gene

No data available for Paralogs for RPL36AP45 Gene

Variants for RPL36AP45 Gene

Relevant External Links for RPL36AP45 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL36AP45

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL36AP45 Gene

Disorders for RPL36AP45 Gene

No disorders were found for RPL36AP45 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL36AP45 Gene

Publications for RPL36AP45 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3 60

Products for RPL36AP45 Gene

Sources for RPL36AP45 Gene

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