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Aliases for RPL36AP39 Gene

Aliases for RPL36AP39 Gene

  • Ribosomal Protein L36a Pseudogene 39 2 3 5
  • RPL36A_17_1112 3

External Ids for RPL36AP39 Gene

Previous GeneCards Identifiers for RPL36AP39 Gene

  • GC11U901266

Summaries for RPL36AP39 Gene

GeneCards Summary for RPL36AP39 Gene

RPL36AP39 (Ribosomal Protein L36a Pseudogene 39) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL36AP39 Gene

Genomics for RPL36AP39 Gene

Regulatory Elements for RPL36AP39 Gene

Enhancers for RPL36AP39 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F002186 1 Ensembl ENCODE 16.2 +394.3 394300 0.8 CTCF MAX GLI4 CDC5L ZIC2 THRB RAD21 ZBTB48 SMC3 L3MBTL2 RPL36AP39 LOC390029 INS INS-IGF2 IGF2 CD81 ENSG00000199550 TH MIR4686 GC11M002206
GH11F002165 0.8 Ensembl 16.2 +374.2 374171 2.0 BCOR CTCF ZMYM3 GLI4 CDC5L RAD21 GTF3C2 ZNF791 ZBTB48 ZNF157 LOC390029 RPL36AP39 TH GC11P002165 GC11M002165
GH11F001777 1.5 FANTOM5 Ensembl ENCODE 0.4 -11.6 -11625 7.0 HDAC1 PKNOX1 GLI4 RAD21 FOS EGR2 USF2 CEBPB MEF2D MAFF LSP1 TNNI2 ENSG00000235027 ENSG00000250397 SYT8 IFITM10 TOLLIP LOC105376517 RPL36AP39
GH11F001785 0.8 Ensembl ENCODE 0.4 -6.4 -6406 0.9 CTCF SMARCA4 POLR2A ZNF512 SYT8 RPL36AP39 LOC105376517
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL36AP39 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL36AP39 Gene

Chromosome:
11
Start:
1,792,525 bp from pter
End:
1,792,920 bp from pter
Size:
396 bases
Orientation:
Plus strand

Genomic View for RPL36AP39 Gene

Genes around RPL36AP39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL36AP39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL36AP39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36AP39 Gene

Proteins for RPL36AP39 Gene

Post-translational modifications for RPL36AP39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL36AP39 Gene

Domains & Families for RPL36AP39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL36AP39 Gene

Function for RPL36AP39 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL36AP39 Gene

Localization for RPL36AP39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL36AP39 Gene

Pathways & Interactions for RPL36AP39 Gene

SuperPathways for RPL36AP39 Gene

No Data Available

Interacting Proteins for RPL36AP39 Gene

Gene Ontology (GO) - Biological Process for RPL36AP39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL36AP39 Gene

Transcripts for RPL36AP39 Gene

mRNA/cDNA for RPL36AP39 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36AP39 Gene

No ASD Table

Relevant External Links for RPL36AP39 Gene

GeneLoc Exon Structure for
RPL36AP39
ECgene alternative splicing isoforms for
RPL36AP39

Expression for RPL36AP39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL36AP39 Gene

mRNA differential expression in normal tissues according to GTEx for RPL36AP39 Gene

This gene is overexpressed in Testis (x36.5), Bladder (x8.3), and Skin - Not Sun Exposed (Suprapubic) (x8.2).

NURSA nuclear receptor signaling pathways regulating expression of RPL36AP39 Gene:

RPL36AP39
genes like me logo Genes that share expression patterns with RPL36AP39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL36AP39 Gene

Orthologs for RPL36AP39 Gene

Evolution for RPL36AP39 Gene

ENSEMBL:
Gene Tree for RPL36AP39 (if available)
TreeFam:
Gene Tree for RPL36AP39 (if available)

No data available for Orthologs for RPL36AP39 Gene

Paralogs for RPL36AP39 Gene

No data available for Paralogs for RPL36AP39 Gene

Variants for RPL36AP39 Gene

Relevant External Links for RPL36AP39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL36AP39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL36AP39 Gene

Disorders for RPL36AP39 Gene

Relevant External Links for RPL36AP39

Genetic Association Database (GAD)
RPL36AP39

No disorders were found for RPL36AP39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL36AP39 Gene

Publications for RPL36AP39 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL36AP39 Gene

Sources for RPL36AP39 Gene

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