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Aliases for RPL36AL Gene

Aliases for RPL36AL Gene

  • Ribosomal Protein L36a-Like 2 3
  • Ribosomal Protein L36a 2 3
  • RPL36A 3 6
  • 60S Ribosomal Protein L36a-Like 3
  • Ribosomal Protein HL44 3

External Ids for RPL36AL Gene

Previous Symbols for RPL36AL Gene

  • RPL36A

Summaries for RPL36AL Gene

Entrez Gene Summary for RPL36AL Gene

  • Cytoplasmic ribosomes, organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein, which shares sequence similarity with yeast ribosomal protein L44, belongs to the L44E (L36AE) family of ribosomal proteins. This gene and the human gene officially named ribosomal protein L36a (RPL36A) encode nearly identical proteins; however, they are distinct genes. Although the name of this gene has been referred to as ribosomal protein L36a (RPL36A), its official name is ribosomal protein L36a-like (RPL36AL). As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL36AL Gene

RPL36AL (Ribosomal Protein L36a-Like) is a Protein Coding gene. Among its related pathways are Disease and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include structural constituent of ribosome. An important paralog of this gene is RPL36A.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL36AL Gene

Genomics for RPL36AL Gene

Genomic Location for RPL36AL Gene

Start:
49,618,519 bp from pter
End:
49,620,685 bp from pter
Size:
2,167 bases
Orientation:
Minus strand

Genomic View for RPL36AL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL36AL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36AL Gene

Regulatory Elements for RPL36AL Gene

Proteins for RPL36AL Gene

  • Protein details for RPL36AL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969Q0-RL36L_HUMAN
    Recommended name:
    60S ribosomal protein L36a-like
    Protein Accession:
    Q969Q0
    Secondary Accessions:
    • Q3B7A5

    Protein attributes for RPL36AL Gene

    Size:
    106 amino acids
    Molecular mass:
    12469 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • This gene has no introns in its coding regions, and therefore, was most likely produced by retrotransposition of the original X-linked gene during evolution

neXtProt entry for RPL36AL Gene

Proteomics data for RPL36AL Gene at MOPED

Post-translational modifications for RPL36AL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RPL36AL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RPL36AL Gene

Domains for RPL36AL Gene

Gene Families for RPL36AL Gene

HGNC:
  • RPL :L ribosomal proteins

Protein Domains for RPL36AL Gene

UniProtKB/Swiss-Prot:

RL36L_HUMAN
Family:
  • Belongs to the ribosomal protein L44e family.:
    • Q969Q0
genes like me logo Genes that share domains with RPL36AL: view

Function for RPL36AL Gene

Gene Ontology (GO) - Molecular Function for RPL36AL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IEA --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with RPL36AL: view

Phenotypes for RPL36AL Gene

genes like me logo Genes that share phenotypes with RPL36AL: view

miRNA for RPL36AL Gene

miRTarBase miRNAs that target RPL36AL

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RPL36AL Gene

Localization for RPL36AL Gene

Subcellular locations from UniProtKB/Swiss-Prot for RPL36AL Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL36AL Gene COMPARTMENTS Subcellular localization image for RPL36AL gene
Compartment Confidence
cytosol 3
extracellular 2
nucleus 1

Gene Ontology (GO) - Cellular Components for RPL36AL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005840 ribosome --
GO:0022625 cytosolic large ribosomal subunit IBA --
genes like me logo Genes that share ontologies with RPL36AL: view

Pathways for RPL36AL Gene

genes like me logo Genes that share pathways with RPL36AL: view

Pathways by source for RPL36AL Gene

1 GeneGo (Thomson Reuters Life Sciences Research) pathway for RPL36AL Gene
1 BioSystems pathway for RPL36AL Gene

Gene Ontology (GO) - Biological Process for RPL36AL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA --
genes like me logo Genes that share ontologies with RPL36AL: view

Transcripts for RPL36AL Gene

mRNA/cDNA for RPL36AL Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(361) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL36AL Gene

Ribosomal protein L36a-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36AL Gene

No ASD Table

Relevant External Links for RPL36AL Gene

GeneLoc Exon Structure for
RPL36AL
ECgene alternative splicing isoforms for
RPL36AL

Expression for RPL36AL Gene

mRNA expression in normal human tissues for RPL36AL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for RPL36AL Gene

SOURCE GeneReport for Unigene cluster for RPL36AL Gene Hs.444749

mRNA Expression by UniProt/SwissProt for RPL36AL Gene

Q969Q0-RL36L_HUMAN
Tissue specificity: Ubiquitously expressed.
genes like me logo Genes that share expressions with RPL36AL: view

Orthologs for RPL36AL Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL36AL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL36AL 36
  • 100 (n)
  • 100 (a)
RPL36AL 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RPL36A 37
  • 99 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 98 (a)
ManyToMany
-- 37
  • 92 (a)
ManyToMany
LOC480311 36
  • 94.03 (n)
  • 99.06 (a)
mouse
(Mus musculus)
Mammalia Rpl36a 37
  • 99 (a)
ManyToMany
Rpl36al 36
  • 92.14 (n)
  • 99.06 (a)
Rpl36al 16
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 99 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 95 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Rpl36al 36
  • 91.82 (n)
  • 99.06 (a)
chicken
(Gallus gallus)
Aves -- 37
  • 89 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 96 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.1359 36
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8630 36
zebrafish
(Danio rerio)
Actinopterygii rpl36a 37
  • 97 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta RpL36A 37
  • 78 (a)
OneToMany
CG7424 38
  • 76 (a)
worm
(Caenorhabditis elegans)
Secernentea rpl-41 37
  • 80 (a)
OneToMany
C09H10.2 38
  • 79 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL42A 37
  • 74 (a)
ManyToMany
RPL42A 39
RPL42B 37
  • 74 (a)
ManyToMany
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.1846 36
barley
(Hordeum vulgare)
Liliopsida Hv.4260 36
corn
(Zea mays)
Liliopsida Zm.2895 36
rice
(Oryza sativa)
Liliopsida Os.22631 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6059 37
  • 77 (a)
OneToMany
Species with no ortholog for RPL36AL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL36AL Gene

ENSEMBL:
Gene Tree for RPL36AL (if available)
TreeFam:
Gene Tree for RPL36AL (if available)

Paralogs for RPL36AL Gene

Paralogs for RPL36AL Gene

Selected SIMAP similar genes for RPL36AL Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with RPL36AL: view

Variants for RPL36AL Gene

Sequence variations from dbSNP and Humsavar for RPL36AL Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs2985698 -- 49,618,693(-) TCTTA(A/C)GCAAA utr-variant-3-prime
rs17121611 -- 49,618,645(+) GACTA(C/T)ACTAA downstream-variant-500B
rs78930973 -- 49,618,621(+) ACTTG(C/T)TAGTA downstream-variant-500B
rs80110552 -- 49,618,622(+) CTTGT(G/T)AGTAA downstream-variant-500B
rs80270706 -- 49,618,268(+) CAGTA(C/G)TGTCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for RPL36AL Gene

Variant ID Type Subtype PubMed ID
esv28926 CNV Gain+Loss 19812545

Relevant External Links for RPL36AL Gene

HapMap Linkage Disequilibrium report
RPL36AL

Disorders for RPL36AL Gene

(1) University of Copenhagen DISEASES for RPL36AL Gene

genes like me logo Genes that share disorders with RPL36AL: view

No data available for UniProtKB/Swiss-Prot for RPL36AL Gene

Publications for RPL36AL Gene

  1. Functional second genes generated by retrotransposition of the X- linked ribosomal protein genes. (PMID: 12490704) Uechi T. … Kenmochi N. (Nucleic Acids Res. 2002) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Characterisation of an mRNA encoding a human ribosomal protein homologous to the yeast L44 ribosomal protein. (PMID: 3542712) Davies M.S. … Craig R.K. (Gene 1986) 3 4
  4. The mapping of seven intron-containing ribosomal protein genes shows they are unlinked in the human genome. (PMID: 1577483) Feo S. … Fried M. (Genomics 1992) 2 3
  5. Primary structure of rat ribosomal protein L36a. (PMID: 3396452) Gallagher M.J. … Wool I.G. (DNA 1988) 3

Products for RPL36AL Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL36AL
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for RPL36AL
    • Block miRNA regulation of RPL36AL using miScript Target Protectors

    Sources for RPL36AL Gene

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