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Aliases for RPL36A-HNRNPH2 Gene

Aliases for RPL36A-HNRNPH2 Gene

  • RPL36A-HNRNPH2 Readthrough 2 3 5

External Ids for RPL36A-HNRNPH2 Gene

Previous GeneCards Identifiers for RPL36A-HNRNPH2 Gene

  • GC0XU901730
  • GC0XP100647

Summaries for RPL36A-HNRNPH2 Gene

Entrez Gene Summary for RPL36A-HNRNPH2 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring ribosomal protein L36a and heterogeneous nuclear ribonucleoprotein H2 (H') genes on chromosome X. The read-through transcript produces a protein with similarity to the protein encoded by the upstream locus, ribosomal protein L36a. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Jan 2011]

GeneCards Summary for RPL36A-HNRNPH2 Gene

RPL36A-HNRNPH2 (RPL36A-HNRNPH2 Readthrough) is a Protein Coding gene. Among its related pathways are Viral mRNA Translation. GO annotations related to this gene include structural constituent of ribosome. An important paralog of this gene is RPL36A.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL36A-HNRNPH2 Gene

Genomics for RPL36A-HNRNPH2 Gene

Regulatory Elements for RPL36A-HNRNPH2 Gene

Enhancers for RPL36A-HNRNPH2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG101390 1.1 ENCODE 0.7 +1.1 1060 3.4 HNRNPUL1 FOXA2 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ARMCX4 RPL36A GLA BEX5 RPL36A-HNRNPH2
GH0XG101402 0.4 ENCODE 0.4 +12.5 12502 1.2 ZBTB26 NR2F2 BTK BEX5 GLA RPL36A-HNRNPH2
GH0XG101405 0.2 Ensembl 0.4 +14.8 14811 0.2 ARMCX4 GLA RPL36A-HNRNPH2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL36A-HNRNPH2 on UCSC Golden Path with GeneCards custom track

Promoters for RPL36A-HNRNPH2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000247624 410 1801 HNRNPUL1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207

Genomic Location for RPL36A-HNRNPH2 Gene

Chromosome:
X
Start:
101,390,890 bp from pter
End:
101,414,140 bp from pter
Size:
23,251 bases
Orientation:
Plus strand

Genomic View for RPL36A-HNRNPH2 Gene

Genes around RPL36A-HNRNPH2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL36A-HNRNPH2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL36A-HNRNPH2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL36A-HNRNPH2 Gene

Proteins for RPL36A-HNRNPH2 Gene

  • Protein details for RPL36A-HNRNPH2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0Y3V9
    Recommended name:
    RPL36A-HNRNPH2 readthrough
    Protein Accession:
    H0Y3V9

    Protein attributes for RPL36A-HNRNPH2 Gene

    Size:
    77 amino acids
    Molecular mass:
    8996 Da
    Quaternary structure:
    No Data Available
  • Protein details for RPL36A-HNRNPH2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H7BZ11
    Recommended name:
    RPL36A-HNRNPH2 readthrough
    Protein Accession:
    H7BZ11

    Protein attributes for RPL36A-HNRNPH2 Gene

    Size:
    118 amino acids
    Molecular mass:
    13792 Da
    Quaternary structure:
    No Data Available

neXtProt entry for RPL36A-HNRNPH2 Gene

Post-translational modifications for RPL36A-HNRNPH2 Gene

No Post-translational modifications

Other Protein References for RPL36A-HNRNPH2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for RPL36A-HNRNPH2 Gene

Domains & Families for RPL36A-HNRNPH2 Gene

Protein Domains for RPL36A-HNRNPH2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RPL36A-HNRNPH2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL36A-HNRNPH2 Gene

Function for RPL36A-HNRNPH2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL36A-HNRNPH2 Gene

Localization for RPL36A-HNRNPH2 Gene

Gene Ontology (GO) - Cellular Components for RPL36A-HNRNPH2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005829 cytosol IDA --
GO:0005840 ribosome IEA --
GO:0005886 plasma membrane IDA --
GO:0022625 cytosolic large ribosomal subunit IBA --
genes like me logo Genes that share ontologies with RPL36A-HNRNPH2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for RPL36A-HNRNPH2 Gene

Pathways & Interactions for RPL36A-HNRNPH2 Gene

SuperPathways for RPL36A-HNRNPH2 Gene

SuperPathway Contained pathways
1 Viral mRNA Translation
.56
genes like me logo Genes that share pathways with RPL36A-HNRNPH2: view

Pathways by source for RPL36A-HNRNPH2 Gene

1 KEGG pathway for RPL36A-HNRNPH2 Gene

Interacting Proteins for RPL36A-HNRNPH2 Gene

Gene Ontology (GO) - Biological Process for RPL36A-HNRNPH2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006412 translation IEA --
genes like me logo Genes that share ontologies with RPL36A-HNRNPH2: view

No data available for SIGNOR curated interactions for RPL36A-HNRNPH2 Gene

Drugs & Compounds for RPL36A-HNRNPH2 Gene

No Compound Related Data Available

Transcripts for RPL36A-HNRNPH2 Gene

mRNA/cDNA for RPL36A-HNRNPH2 Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL36A-HNRNPH2 Gene

No ASD Table

Relevant External Links for RPL36A-HNRNPH2 Gene

GeneLoc Exon Structure for
RPL36A-HNRNPH2
ECgene alternative splicing isoforms for
RPL36A-HNRNPH2

Expression for RPL36A-HNRNPH2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL36A-HNRNPH2 Gene

genes like me logo Genes that share expression patterns with RPL36A-HNRNPH2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL36A-HNRNPH2 Gene

Orthologs for RPL36A-HNRNPH2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RPL36A-HNRNPH2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RPL36A 35
  • 95 (a)
OneToMany
-- 35
  • 92 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 95 (a)
ManyToMany
LOC102157323 34
  • 91 (n)
oppossum
(Monodelphis domestica)
Mammalia RPL36A-HNRNPH2 35
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rpl36al 35
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 92 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC100910714 34
  • 85.63 (n)
chicken
(Gallus gallus)
Aves -- 35
  • 86 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 92 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii rpl36a 35
  • 93 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta RpL36A 35
  • 73 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea rpl-41 35
  • 74 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL42A 35
  • 71 (a)
ManyToMany
RPL42B 35
  • 71 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6059 35
  • 75 (a)
OneToMany
Species where no ortholog for RPL36A-HNRNPH2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for RPL36A-HNRNPH2 Gene

ENSEMBL:
Gene Tree for RPL36A-HNRNPH2 (if available)
TreeFam:
Gene Tree for RPL36A-HNRNPH2 (if available)

Paralogs for RPL36A-HNRNPH2 Gene

Paralogs for RPL36A-HNRNPH2 Gene

(2) SIMAP similar genes for RPL36A-HNRNPH2 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for RPL36A-HNRNPH2 Gene

genes like me logo Genes that share paralogs with RPL36A-HNRNPH2: view

Variants for RPL36A-HNRNPH2 Gene

Sequence variations from dbSNP and Humsavar for RPL36A-HNRNPH2 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs104894828 Pathogenic 101,398,467(-) CCTCC(A/G/T)ACACA intron-variant, nc-transcript-variant, reference, missense
rs104894829 Pathogenic 101,407,773(-) GGGCT(A/G)GCTGC intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, stop-gained
rs104894830 Pathogenic 101,398,483(-) TATTC(A/G)TGTCT intron-variant, nc-transcript-variant, reference, missense
rs104894831 Pathogenic 101,407,786(-) GGACG(C/T)CTACC intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, missense
rs104894832 Pathogenic 101,398,387(-) AGCAA(A/C/G)GGTAC intron-variant, nc-transcript-variant, reference, missense

Relevant External Links for RPL36A-HNRNPH2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL36A-HNRNPH2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL36A-HNRNPH2 Gene

Disorders for RPL36A-HNRNPH2 Gene

Relevant External Links for RPL36A-HNRNPH2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL36A-HNRNPH2

No disorders were found for RPL36A-HNRNPH2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL36A-HNRNPH2 Gene

Publications for RPL36A-HNRNPH2 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for RPL36A-HNRNPH2 Gene

Sources for RPL36A-HNRNPH2 Gene

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