Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL35P6 Gene

Subcategory (RNA class) for RPL35P6 Gene

lncRNA

Aliases for RPL35P6 Gene

  • Ribosomal Protein L35 Pseudogene 6 2 3 5
  • RPL35_5_881 3

External Ids for RPL35P6 Gene

ORGUL Members for RPL35P6 Gene

Previous GeneCards Identifiers for RPL35P6 Gene

  • GC08U901171
  • GC08M018633

Summaries for RPL35P6 Gene

GeneCards Summary for RPL35P6 Gene

RPL35P6 (Ribosomal Protein L35 Pseudogene 6) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL35P6 Gene

Genomics for RPL35P6 Gene

Regulatory Elements for RPL35P6 Gene

Enhancers for RPL35P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F018838 1.1 Ensembl ENCODE 6.5 -65.4 -65392 4.3 SOX13 CTCF PKNOX1 CEBPG ZIC2 YY1 ZFHX2 SCRT2 HNF4G PRDM10 PSD3 RPL35P6 GC08P018838 GC08P018841
GH08F018770 0.2 ENCODE 5.8 +4.1 4128 0.9 PSD3 RPL35P6 GC08P018764
GH08F019279 0.6 ENCODE 4.6 -505.4 -505398 1.1 SOX13 GATAD2A SOX5 SAP130 TEAD1 FOXA3 CEBPG ZNF644 TEAD3 HNF1A SH2D4A RPL35P6 ENSG00000279919 GC08P019298
GH08F019437 0.8 Ensembl ENCODE 4.6 -663.4 -663429 2.1 SOX13 TFAP4 ZNF211 SAP130 MAX SIN3A ZBTB40 RARA TEAD3 FOS CSGALNACT1 RPL35P6 LOC102724881 LOC105379308
GH08F018771 0.6 ENCODE 0.8 +4.8 4811 0.2 ZNF680 SMARCA4 POU5F1 PSD3 RPL35P6 GC08P018764
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL35P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL35P6 Gene

Chromosome:
8
Start:
18,774,547 bp from pter
End:
18,774,966 bp from pter
Size:
420 bases
Orientation:
Minus strand

Genomic View for RPL35P6 Gene

Genes around RPL35P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL35P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL35P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL35P6 Gene

Proteins for RPL35P6 Gene

Post-translational modifications for RPL35P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL35P6 Gene

Domains & Families for RPL35P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL35P6 Gene

Function for RPL35P6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL35P6 Gene

Localization for RPL35P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL35P6 Gene

Pathways & Interactions for RPL35P6 Gene

SuperPathways for RPL35P6 Gene

No Data Available

Interacting Proteins for RPL35P6 Gene

Gene Ontology (GO) - Biological Process for RPL35P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL35P6 Gene

Transcripts for RPL35P6 Gene

mRNA/cDNA for RPL35P6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL35P6 Gene

No ASD Table

Relevant External Links for RPL35P6 Gene

GeneLoc Exon Structure for
RPL35P6
ECgene alternative splicing isoforms for
RPL35P6

Expression for RPL35P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL35P6 Gene

mRNA differential expression in normal tissues according to GTEx for RPL35P6 Gene

This gene is overexpressed in Heart - Left Ventricle (x18.6) and Heart - Atrial Appendage (x13.7).

NURSA nuclear receptor signaling pathways regulating expression of RPL35P6 Gene:

RPL35P6
genes like me logo Genes that share expression patterns with RPL35P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL35P6 Gene

Orthologs for RPL35P6 Gene

Evolution for RPL35P6 Gene

ENSEMBL:
Gene Tree for RPL35P6 (if available)
TreeFam:
Gene Tree for RPL35P6 (if available)

No data available for Orthologs for RPL35P6 Gene

Paralogs for RPL35P6 Gene

No data available for Paralogs for RPL35P6 Gene

Variants for RPL35P6 Gene

Relevant External Links for RPL35P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL35P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL35P6 Gene

Disorders for RPL35P6 Gene

Relevant External Links for RPL35P6

Genetic Association Database (GAD)
RPL35P6

No disorders were found for RPL35P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL35P6 Gene

Publications for RPL35P6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 46 64
  3. A genome-wide association study for blood lipid phenotypes in the Framingham Heart Study. (PMID: 17903299) Kathiresan S. … Cupples L.A. (BMC Med. Genet. 2007) 46 64

Products for RPL35P6 Gene

Sources for RPL35P6 Gene

Content
Loading form....