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RPL32P3 Gene(Pseudogene)

Ribosomal Protein L32 Pseudogene 3

GCID:
GC03M129382
GIFtS:
25
Genes Participants
UDN Logo

Aliases for RPL32P3 Gene

Aliases for RPL32P3 Gene

  • Ribosomal Protein L32 Pseudogene 3 2 3 5

External Ids for RPL32P3 Gene

Previous GeneCards Identifiers for RPL32P3 Gene

  • GC03M130585
  • GC03M129101
  • GC03M126487

Summaries for RPL32P3 Gene

GeneCards Summary for RPL32P3 Gene

RPL32P3 (Ribosomal Protein L32 Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL32P3 Gene

Genomics for RPL32P3 Gene

Products:

  1. Regulatory Element

Regulatory Elements for RPL32P3 Gene

Enhancers for RPL32P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G129438 1.4 ENCODE dbSUPER 38.1 -41.1 -41068 4.5 CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC RPL32P3 ENSG00000244932 PLXND1 IFT122 ISY1 RHO H1FX MBD4 PIR50923 GC03P129587
GH03G129447 1.7 FANTOM5 Ensembl ENCODE dbSUPER 30.8 -49.6 -49569 4.0 HDAC1 TBP PKNOX1 ATF1 CREB3L1 NFRKB ZBTB40 YY1 TCF12 ZNF766 RPL32P3 ISY1 H1FX RHO PLXND1 ENSG00000244932 IFT122 ACAD9 MBD4 GC03P129587
GH03G129591 1.8 FANTOM5 ENCODE dbSUPER 26.5 -201.3 -201319 19.4 MLX CREB3L1 AGO1 ZFP64 YBX1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 RPL32P3 H1FX-AS1 IFT122 ISY1 LINC02021 ENSG00000244932 H1FX RHO PLXND1 ENSG00000203644
GH03G129484 1.4 Ensembl ENCODE dbSUPER 31.6 -86.9 -86872 3.8 PKNOX1 NFIB SIN3A RAD21 ZBTB7B YY1 FOS RCOR1 EGR2 HCFC1 RPL32P3 IFT122 ENSG00000244932 H1FX-AS1 RHO PLXND1 MBD4 RNY3P13 PIR40537 PIR61564
GH03G128481 1.4 ENCODE dbSUPER 23.5 +911.9 911907 11.8 HDGF PKNOX1 CREB3L1 AGO1 ZFP64 ARID4B SIN3A DMAP1 FOS ZNF263 RPL32P3 ISY1 DNAJB8 DNAJB8-AS1 H1FX H1FX-AS1 IFT122 ENSG00000244932 GATA2-AS1 TMED10P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL32P3 on UCSC Golden Path with GeneCards custom track

Promoters for RPL32P3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000158222 455 1601 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF143

Transcription factor binding sites by QIAGEN in the RPL32P3 gene promoter:

Genomic Location for RPL32P3 Gene

Chromosome:
3
Start:
129,382,834 bp from pter
End:
129,399,655 bp from pter
Size:
16,822 bases
Orientation:
Minus strand

Genomic View for RPL32P3 Gene

Genes around RPL32P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL32P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL32P3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for RPL32P3 Gene

Proteins for RPL32P3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for RPL32P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL32P3 Gene

Domains & Families for RPL32P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL32P3 Gene

Function for RPL32P3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL32P3 Gene

Localization for RPL32P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL32P3 Gene

Pathways & Interactions for RPL32P3 Gene

SuperPathways for RPL32P3 Gene

PathCards logo More details on SuperPathways for RPL32P3
No Data Available

Interacting Proteins for RPL32P3 Gene

Gene Ontology (GO) - Biological Process for RPL32P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL32P3 Gene

Drugs & Compounds for RPL32P3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for RPL32P3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for RPL32P3 Gene

(11) Additional mRNA sequences :
(59) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL32P3 Gene

Ribosomal protein L32 pseudogene 3:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL32P3 Gene

No ASD Table

Relevant External Links for RPL32P3 Gene

GeneLoc Exon Structure for
RPL32P3
ECgene alternative splicing isoforms for
RPL32P3

Expression for RPL32P3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL32P3 Gene

mRNA expression in normal human tissues for RPL32P3 Gene
mRNA expression by BioGPS for RPL32P3 GenemRNA expression by GTEx for RPL32P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL32P3 Gene:

RPL32P3

SOURCE GeneReport for Unigene cluster for RPL32P3 Gene:

Hs.477537
genes like me logo Genes that share expression patterns with RPL32P3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL32P3 Gene

Orthologs for RPL32P3 Gene

Evolution for RPL32P3 Gene

ENSEMBL:
Gene Tree for RPL32P3 (if available)
TreeFam:
Gene Tree for RPL32P3 (if available)

No data available for Orthologs for RPL32P3 Gene

Paralogs for RPL32P3 Gene

No data available for Paralogs for RPL32P3 Gene

Variants for RPL32P3 Gene

Sequence variations from dbSNP and Humsavar for RPL32P3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000280491 -- 129,385,366(+) ATTTT(C/T)ACGCT intron-variant
rs1000353487 -- 129,382,440(+) AGATG(C/T)TGTAA downstream-variant-500B
rs1000932261 -- 129,385,245(+) CATCA(A/G)AGTAC intron-variant
rs1001156513 -- 129,390,630(+) CACAA(A/G)TTCAA intron-variant
rs1001174994 -- 129,393,653(+) GGGCA(A/G)TCATT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL32P3 Gene

Variant ID Type Subtype PubMed ID
esv2620174 CNV deletion 19546169
esv2725901 CNV deletion 23290073
esv3597741 CNV loss 21293372
nsv591652 CNV gain 21841781
nsv591658 CNV loss 21841781
nsv965210 CNV duplication 23825009
nsv979877 CNV duplication 23825009

Relevant External Links for RPL32P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL32P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL32P3 Gene

Disorders for RPL32P3 Gene

Relevant External Links for RPL32P3

Genetic Association Database (GAD)
RPL32P3
Human Genome Epidemiology (HuGE) Navigator
RPL32P3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL32P3

No disorders were found for RPL32P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL32P3 Gene

Publications for RPL32P3 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. (PMID: 21083371) Chinn L.W. … O'Brien S.J. (J. Infect. Dis. 2010) 46 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for RPL32P3 Gene

Sources for RPL32P3 Gene

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