Aliases
for RPL32P3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
|---|
| Ribosomal Protein L32 Pseudogene 31 2 |
| External Ids: | HGNC: 270241 | Entrez Gene: 1322412 | Ensembl: ENSG000002514747 |
Export aliases for RPL32P3 gene to outside databasesPrevious GC identifers: GC03M130585 GC03M126487
|---|
Summaries
for RPL32P3 gene(According to Entrez Gene,
GeneCards,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
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GeneCards Summary for RPL32P3 Gene:
RPL32P3 (ribosomal protein L32 pseudogene 3) is a pseudogene, and is affiliated with the lncRNA class. Diseases associated with RPL32P3 include hiv-1.
|
Genomic Views
for RPL32P3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 75),
Regulatory elements and Epigenetics data according to
QIAGEN, and/or
SwitchGear Genomics)
About This Section
TryGeneCards Plus | RefSeq DNA sequence:- NC_000003.12 NC_018914.2 NT_005612.17
Regulatory elements:
 Regulatory transcription factor binding sites in the RPL32P3 gene promoter:
HFH-3 Nkx2-2 p300 GATA-1 FOXI1 PPAR-gamma1 SRY FOXJ2 (long isoform) PPAR-gamma2 FOXJ2
Other transcription factors
Search Chromatin IP Primers for RPL32P3
Epigenetics:
| | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RPL32P3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3q21.3 Ensembl cytogenetic band: 3q21.3 HGNC cytogenetic band: 3q21.3RPL32P3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M129101: view genomic region
(about GC identifiers)
Start:
|
129,101,677 bp from pter |
End:
|
129,118,498 bp from pter |
Size:
|
16,822 bases |
Orientation:
|
minus strand |
ORGUL member locations:
Legend (see complete legend)
 |
Proteins
for RPL32P3 gene
(According to
1UniProtKB,
HORDE,
2neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Antibodies by
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
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UniProtKB: --
|
Domains /
Families
for RPL32P3 gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
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Function
for RPL32P3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
genOway,
transcription factor targeting from QIAGEN
and/or HOMER,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
SwitchGear Genomics,
Gene Editing from DNA2.0,
Clones from OriGene,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
ESI BIO,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Animal Models:
Inhib. RNA
Products: |  | OriGene RNAi products in human, mouse, rat for RPL32P3
| | | Predesigned siRNA for gene silencing in human, mouse, rat RPL32P3 |
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for RPL32P3 | |  | Browse ESI BIO Cell Lines and PureStem Progenitors for RPL32P3  | In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPL32P3 |
Localization
for RPL32P3 gene
(According to UniProtKB, COMPARTMENTS Subcellular localization database,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Pathways & Interactions
for RPL32P3 gene
(SuperPaths according to PathCards,
Pathways according to
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
QIAGEN,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene).
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Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RPL32P3
Interactions:
Search GeneGlobe Interaction Network for RPL32P3
|
Drugs & Compounds
for RPL32P3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience,
ApexBio,
HMDB,
BitterDB, and/or
Novoseek,
Ligands according to IUPHAR,
and Drugs according to DrugBank,
Enzo Life Sciences, and/or
PharmGKB)
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 Browse compounds at ApexBio
 Browse Tocris compounds for RPL32P3
|
Transcripts
for RPL32P3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
SwitchGear Genomics,
Tagged/untagged cDNA clones from
OriGene,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene, and/or
QIAGEN
)
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Unigene Clusters for RPL32P3: Ribosomal protein L32 pseudogene 3 Hs.477537 [show with all ESTs], Hs.652423 [show with all ESTs]Unigene Representative Sequences: BX641154, AK0934779 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000507287 ENST00000510078(uc003ema.3 uc003emb.3) ENST00000514355(uc003emd.1)
ENST00000507238 ENST00000515866 ENST00000499631 ENST00000506593(uc003eme.1)
ENST00000359025 ENST00000394491
Inhib. RNA
Products: | | OriGene RNAi products in human, mouse, rat for RPL32P3
| |
| | Predesigned siRNA for gene silencing in human, mouse, rat RPL32P3 |
Primer
Products: | | OriGene qSTAR qPCR primer pairs in human, mouse for RPL32P3
| | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat RPL32P3 | | | QuantiTect SYBR Green Assays in human, mouse, rat RPL32P3 | | | QuantiFast Probe-based Assays in human, mouse, rat RPL32P3 |
Additional mRNA sequence: AK093477.1 BC015389.1 BC053996.1 NR_003111.2 19 DOTS entries: DT.97787663 DT.406936 DT.451397 DT.446483 DT.100021109 DT.120893136 DT.120893219 DT.452071 DT.107258 DT.120893242 DT.100778758 DT.75179691 DT.95148074 DT.100778759 DT.92035783 DT.92050305 DT.303500 DT.95103175 DT.99950971 Selected AceView cDNA sequences (see all 59): D20418 AA211063 AI033488 BQ672370 AA412713 AA815438 BP432222 AW029087 AA358569 AI872356 AI453259 BG032913 AA210722 AA714216 AK093477 R91777 BC015389 AA828581 BG698473 AA210827 BQ711095 CB242625 CA502932 BC053996
GeneLoc Exon Structure
|
Expression
for RPL32P3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MaxQB,
plus additional links to
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
QIAGEN,
Primers from
OriGene, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
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RPL32P3 expression in normal human tissues
(normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: ACAGGTGTTT
About this image RPL32P3 Protein expression data from MOPED1, PaxDb2 and
MaxQB3:  --
SOURCE GeneReport for Unigene clusters: Hs.477537 Hs.652423
Custom PCR Arrays for RPL32P3
Primer
Products: | | OriGene qSTAR qPCR primer pairs in human, mouse for RPL32P3
| | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat RPL32P3 | | | QuantiTect SYBR Green Assays in human, mouse, rat RPL32P3 | | | QuantiFast Probe-based Assays in human, mouse, rat RPL32P3 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPL32P3 |
Orthologs
for RPL32P3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
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--
ENSEMBL Gene Tree for RPL32P3 (if available)
TreeFam Gene Tree for RPL32P3 (if available) |
Paralogs
for RPL32P3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Genomic Variants
for RPL32P3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD), the Human Cytochrome P450 Allele
Nomenclature Database, and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 3 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for RPL32P3 (129101677 - 129118498 bp)
Structural Variations
Database of Genomic Variants (DGV) 4 variations for RPL32P3: About this table
| | Site Specific Mutation Identification with PCR Assays |
|
Disorders
/ Diseases
for RPL32P3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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1  disease for RPL32P3:
About MalaCardshiv-1
RPL32P3 for disorders About GeneDecksing
Congresses - knowledge worth sharing: 
The International Symposium on Pneumococci and Pneumococcal Diseases (ISPPD) 9 - 13 March 2014Genetic Association Database (GAD): RPL32P3
Human Genome Epidemiology (HuGE) Navigator: RPL32P3 (1 document)
Export disorders for RPL32P3 gene to outside databases
|
Publications
for RPL32P3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
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PubMed articles for RPL32P3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with RPL32P3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
- Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. (PubMed id 21083371)4 Chinn L.W....O'Brien S.J. (J. Infect. Dis. 2010)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
|
External Searches for RPL32P3 gene (in PubMed,
OMIM, and NCBI Bookshelf)
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|
Genome Databases showing RPL32P3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
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|
Other Databases showing RPL32P3 gene
(According to HUGE)
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Specialized Databases showing RPL32P3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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| Name | Description |
| PharmGKB entry for RPL32P3 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
TryGeneCards Plus | Patent Information for RPL32P3 gene:
Search GeneIP for patents involving RPL32P3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RPL32P3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or
ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory,
genOway)
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 | |
 |
| | | | |
 |
 |
|  | Block miRNA regulation of human, mouse, rat RPL32P3 using miScript Target Protectors | | SeqTarget long-range PCR primers for resequencing RPL32P3 | | | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RPL32P3 | | Predesigned siRNA for gene silencing in human, mouse, rat RPL32P3 | | | QuantiFast Probe-based Assays in human, mouse, rat RPL32P3 | | QuantiTect SYBR Green Assays in human, mouse, rat RPL32P3 | | | Custom PCR Arrays for RPL32P3 | | Search Chromatin IP Primers for RPL32P3 | | | Pre-validated RT2 qPCR Primer Assay in human, mouse / rat RPL32P3 | | Search GeneGlobe Interaction Network for RPL32P3 | | | Regulatory tfbs in RPL32P3 promoter |
| |
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| | | Search Tocris compounds for RPL32P3 |
| | |  |  |  |
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 |  | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPL32P3 |
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| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RPL32P3 |
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