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RPL32P3 Gene

pseudogene GIFtS: 27
GCID: GC03M129101

Ribosomal Protein L32 Pseudogene 3

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Ribosomal Protein L32 Pseudogene 3¹ ²

External Ids:	HGNC: 27024¹	Entrez Gene: 132241²	Ensembl: ENSG00000251474⁷

ORGUL members:

Export aliases for RPL32P3 gene to outside databases

Previous GC identifers: GC03M130585 GC03M126487

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for RPL32P3 Gene:

RPL32P3 (ribosomal protein L32 pseudogene 3) is a pseudogene, and is affiliated with the lncRNA class.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:

NC_000003.11 NC_018914.2 NT_005612.17

Regulatory elements:

Regulatory transcription factor binding sites in the RPL32P3 gene promoter:
HFH-3 Nkx2-2 p300 GATA-1 FOXI1 PPAR-gamma1 SRY FOXJ2 (long isoform) PPAR-gamma2 FOXJ2
Other transcription factors

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Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RPL32P3

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q21.3 Ensembl cytogenetic band: 3q21.3 HGNC cytogenetic band: 3q21.3

RPL32P3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RPL32P3 gene location

GeneLoc information about chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03M129101: view genomic region (about GC identifiers)

Start:	129,101,677 bp from pter	End:	129,118,498 bp from pter
Size:	16,822 bases	Orientation:	minus strand

ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for RPL32P3

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB: --

(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Custom Pathway & Disease-focused RT² Profiler PCR Arrays for RPL32P3
Interactions:

Search GeneGlobe Interaction Network for RPL32P3

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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Unigene Clusters for RPL32P3:

Ribosomal protein L32 pseudogene 3

Hs.477537 [show with all ESTs], Hs.652423 [show with all ESTs]

Unigene Representative Sequences: BX641154, AK093477

9 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000507287 ENST00000510078(uc003ema.3 uc003emb.3) ENST00000514355(uc003emd.1)

ENST00000507238 ENST00000515866 ENST00000499631 ENST00000506593(uc003eme.1)

ENST00000359025 ENST00000394491

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Additional mRNA sequence:

AK093477.1 BC015389.1 BC053996.1 NR_003111.2

19 DOTS entries:

DT.97787663 DT.406936 DT.451397 DT.446483 DT.100021109 DT.120893136 DT.120893219 DT.452071

DT.107258 DT.120893242 DT.100778758 DT.75179691 DT.95148074 DT.100778759 DT.92035783 DT.92050305

DT.303500 DT.95103175 DT.99950971

Selected AceView cDNA sequences (see all 59):

D20418 AA211063 AI033488 BQ672370 AA412713 AA815438 BP432222 AW029087

AA358569 AI872356 AI453259 BG032913 AA210722 AA714216 AK093477 R91777

BC015389 AA828581 BG698473 AA210827 BQ711095 CB242625 CA502932 BC053996

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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RPL32P3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: ACAGGTGTTT

About this image

RPL32P3 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

--

SOURCE GeneReport for Unigene clusters: Hs.477537 Hs.652423

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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--

ENSEMBL Gene Tree for RPL32P3 (if available)
TreeFam Gene Tree for RPL32P3 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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SNP ID	Valid	Clinical significance	Chr 3 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs140054306^1,2		--	129101189(+)	`GACCTC/GAGGCC`	1	--	ds500¹		0	--	--	--	--
rs145538624^1,2	C	--	129101302(+)	`TTAAAG/TCAGGG`	1	--	ds500¹		0	--	--	--	--
rs116666448^1,2	C,F	--	129101327(+)	`GCTAGC/ACATTA`	1	--	ds500¹		1		NA	120
rs73202258^1,2	C	--	129101389(+)	`GTAGGA/GAAGTG`	1	--	ds500¹		3		CSA WA NA	240
rs142362536^1,2	C	--	129101395(+)	`AAGTGA/GAGATG`	1	--	ds500¹		0	--	--	--	--
rs72982631^1,2	C	--	129101546(+)	`AAGAAC/TCTTCC`	1	--	ds500¹		3		WA EA	240
rs182830504^1,2		--	129101740(+)	`GAATTA/GAAAGG`	1	--	nc-transcript-variant		0	--	--	--	--
rs140398095^1,2		--	129101801(+)	`TAAATG/TAAAAA`	1	--	nc-transcript-variant		0	--	--	--	--
rs72982633^1,2	C	--	129101843(+)	`CAACAT/CGGGAC`	1	--	nc-transcript-variant		3		WA EA	240
rs185755720^1,2		--	129101846(+)	`CATGGA/GACAGG`	1	--	nc-transcript-variant		0	--	--	--	--

HapMap Linkage Disequilibrium report for RPL32P3 (129101677 - 129118498 bp)

Structural Variations
Database of Genomic Variants (DGV) 4 variations for RPL32P3: About this table

Variant ID	Type	Subtype	PubMed ID
esv2725901	CNV	Deletion	23290073
esv2620174	CNV	Deletion	19546169
nsv877476	CNV	Gain	21882294
nsv877475	CNV	Gain	21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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Find genes that share disorders with RPL32P3 About GenesLikeMe

Genetic Association Database (GAD): RPL32P3
Human Genome Epidemiology (HuGE) Navigator: RPL32P3 (1 document)

Export disorders for RPL32P3 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for RPL32P3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with RPL32P3)

Utopia: connect your pdf to the dynamic
world of online information

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)^{1, 3} Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. (PubMed id 21083371)⁴ Chinn L.W....O'Brien S.J. (J. Infect. Dis. 2010)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)¹ Kimura K.... Sugano S. (Genome Res. 2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)¹ Ota T.... Sugano S. (Nat. Genet. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 132241	HGNC: 27024	AceView: LOC132241	Ensembl:ENSG00000251474	euGenes: HUgn132241
ECgene: RPL32P3	H-InvDB: RPL32P3

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for RPL32P3	Pharmacogenomics, SNPs, Pathways

Intellectual Property for RPL32P3 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for RPL32P3 gene:
Search GeneIP for patents involving RPL32P3

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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RPL32P3 Gene

Ribosomal Protein L32 Pseudogene 3

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RPL32P3 Gene

Ribosomal Protein L32 Pseudogene 3

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for RPL32P3 gene

Proteins
for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

Expression
for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene

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for RPL32P3 gene