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Aliases for RPL31P54 Gene

Subcategory (RNA class) for RPL31P54 Gene

lncRNA

Aliases for RPL31P54 Gene

  • Ribosomal Protein L31 Pseudogene 54 2 3 5
  • RPL31_27_1326 3

External Ids for RPL31P54 Gene

ORGUL Members for RPL31P54 Gene

Previous GeneCards Identifiers for RPL31P54 Gene

  • GC13U900622
  • GC13P078997

Summaries for RPL31P54 Gene

GeneCards Summary for RPL31P54 Gene

RPL31P54 (Ribosomal Protein L31 Pseudogene 54) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL31P54 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL31P54 Gene

Genomics for RPL31P54 Gene

GeneHancer (GH) Regulatory Elements for RPL31P54 Gene

Promoters and enhancers for RPL31P54 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I078421 Enhancer 0.2 FANTOM5 550.8 -0.7 -701 0.3 RPL31P54 RNF219 GC13M078419 GC13M078356 RNY3P3 RNF219-AS1
GH13I077696 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 5.1 -725.0 -724992 3.4 HDGF PKNOX1 ARNT SIN3A FEZF1 BRCA1 GLIS2 ZNF143 RUNX3 SP3 MIR3665 SLAIN1 RPL31P54 LOC100129307
GH13I078401 Enhancer 1 VISTA UCNEbase 0.3 -20.3 -20281 1.3 PKNOX1 REST EZH2 RPL31P54 GC13M078356 RNY3P3 RNF219-AS1
GH13I078430 Enhancer 0.4 ENCODE 0.4 +7.9 7885 1.1 MAFK TRIM28 GC13M078419 RPL31P54 RNF219-AS1
GH13I078383 Enhancer 0.4 UCNEbase 0.3 -39.6 -39588 0.3 GC13M078356 RNY3P3 RPL31P54 RNF219-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL31P54 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL31P54 Gene

Genomic Locations for RPL31P54 Gene
chr13:78,422,823-78,423,192
(GRCh38/hg38)
Size:
370 bases
Orientation:
Plus strand
chr13:78,996,958-78,997,327
(GRCh37/hg19)

Genomic View for RPL31P54 Gene

Genes around RPL31P54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL31P54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL31P54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL31P54 Gene

Proteins for RPL31P54 Gene

Post-translational modifications for RPL31P54 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL31P54 Gene

Domains & Families for RPL31P54 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL31P54 Gene

Function for RPL31P54 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL31P54 Gene

Localization for RPL31P54 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL31P54 Gene

Pathways & Interactions for RPL31P54 Gene

SuperPathways for RPL31P54 Gene

No Data Available

Interacting Proteins for RPL31P54 Gene

Gene Ontology (GO) - Biological Process for RPL31P54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL31P54 Gene

Drugs & Compounds for RPL31P54 Gene

No Compound Related Data Available

Transcripts for RPL31P54 Gene

mRNA/cDNA for RPL31P54 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL31P54 Gene

No ASD Table

Relevant External Links for RPL31P54 Gene

GeneLoc Exon Structure for
RPL31P54
ECgene alternative splicing isoforms for
RPL31P54

Expression for RPL31P54 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL31P54 Gene

mRNA differential expression in normal tissues according to GTEx for RPL31P54 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x9.4), Brain - Caudate (basal ganglia) (x8.6), Brain - Nucleus accumbens (basal ganglia) (x7.4), Brain - Amygdala (x6.5), Brain - Hippocampus (x4.9), and Brain - Anterior cingulate cortex (BA24) (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of RPL31P54 Gene:

RPL31P54
genes like me logo Genes that share expression patterns with RPL31P54: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL31P54 Gene

Orthologs for RPL31P54 Gene

Evolution for RPL31P54 Gene

ENSEMBL:
Gene Tree for RPL31P54 (if available)
TreeFam:
Gene Tree for RPL31P54 (if available)

No data available for Orthologs for RPL31P54 Gene

Paralogs for RPL31P54 Gene

No data available for Paralogs for RPL31P54 Gene

Variants for RPL31P54 Gene

Additional Variant Information for RPL31P54 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL31P54

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL31P54 Gene

Disorders for RPL31P54 Gene

Additional Disease Information for RPL31P54

Genetic Association Database
(GAD)

No disorders were found for RPL31P54 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL31P54 Gene

Publications for RPL31P54 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Framingham Heart Study genome-wide association: results for pulmonary function measures. (PMID: 17903307) Wilk JB … O'Connor GT (BMC medical genetics 2007) 44 58

Products for RPL31P54 Gene

Sources for RPL31P54 Gene

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