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Aliases for RPL31 Gene

Aliases for RPL31 Gene

  • Ribosomal Protein L31 2 3 5
  • Large Ribosomal Subunit Protein EL31 3 4
  • 60S Ribosomal Protein L31 3
  • L31 3

External Ids for RPL31 Gene

Previous GeneCards Identifiers for RPL31 Gene

  • GC02P099482
  • GC02P100071
  • GC02P101224
  • GC02P101240
  • GC02P101077
  • GC02P101618
  • GC02P095382

Summaries for RPL31 Gene

Entrez Gene Summary for RPL31 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L31E family of ribosomal proteins. It is located in the cytoplasm. Higher levels of expression of this gene in familial adenomatous polyps compared to matched normal tissues have been observed. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL31 Gene

RPL31 (Ribosomal Protein L31) is a Protein Coding gene. Diseases associated with RPL31 include Chancroid and Diamond-Blackfan Anemia. Among its related pathways are Viral mRNA Translation and rRNA processing in the nucleus and cytosol. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome.

Gene Wiki entry for RPL31 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL31 Gene

Genomics for RPL31 Gene

Regulatory Elements for RPL31 Gene

Enhancers for RPL31 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G101080 1.3 ENCODE dbSUPER 10.1 +79.7 79717 1.7 CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF766 KLF13 SP3 MXD4 ZNF592 LOC101927142 ENSG00000223947 RPL31 NPAS2 TBC1D8-AS1 TBC1D8 GC02P101087 GC02P101072
GH02G101047 0.9 ENCODE dbSUPER 10.9 +45.9 45915 1.2 RFX1 ZFP64 ZNF426 ZNF623 ZNF518A ZNF697 ZNF555 JUND ZNF34 SMARCA4 ENSG00000223947 RPL31 ENSG00000232034 NPAS2 LOC101927142 SNORD89 BBIP1P1 LOC105373510
GH02G100880 1.5 Ensembl ENCODE dbSUPER 6 -118.9 -118930 4.1 FOXA2 MLX ARID4B DMAP1 ZNF48 YY1 TCF12 GATA2 FOS ZNF263 ENSG00000232034 NPAS2 RPL31 GC02M100833 LOC101927142
GH02G100603 0.7 FANTOM5 ENCODE 11.2 -398.0 -398036 0.1 NRF1 ZBTB40 PDCL3 ENSG00000223947 RPL31 LINC01849 GC02P100600
GH02G101163 0.6 ENCODE 11.1 +161.4 161419 0.2 RFX1 NR2F1 NRF1 HLF MAX FEZF1 RFX3 ZSCAN5C NR2C1 NR2C2 RPL31 ENSG00000223947 LOC101927142 NPAS2 ENSG00000232034 TBC1D8-AS1 CNOT11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL31 on UCSC Golden Path with GeneCards custom track

Promoters for RPL31 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000120755 571 1601 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3

Genomic Location for RPL31 Gene

Chromosome:
2
Start:
101,001,715 bp from pter
End:
101,024,032 bp from pter
Size:
22,318 bases
Orientation:
Plus strand

Genomic View for RPL31 Gene

Genes around RPL31 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL31 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL31 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL31 Gene

Proteins for RPL31 Gene

  • Protein details for RPL31 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P62899-RL31_HUMAN
    Recommended name:
    60S ribosomal protein L31
    Protein Accession:
    P62899
    Secondary Accessions:
    • B7Z4K2
    • D3DVJ4
    • P12947
    • Q53SQ5
    • Q6IRZ0
    • Q6LBJ6

    Protein attributes for RPL31 Gene

    Size:
    125 amino acids
    Molecular mass:
    14463 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPL31 Gene

    Alternative splice isoforms for RPL31 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RPL31 Gene

Post-translational modifications for RPL31 Gene

  • Ubiquitination at Lys39, Lys55, Lys70, Lys75, and isoforms=115
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for RPL31 Gene

Domains & Families for RPL31 Gene

Gene Families for RPL31 Gene

Protein Domains for RPL31 Gene

Graphical View of Domain Structure for InterPro Entry

P62899

UniProtKB/Swiss-Prot:

RL31_HUMAN :
  • Belongs to the eukaryotic ribosomal protein eL31 family.
Family:
  • Belongs to the eukaryotic ribosomal protein eL31 family.
genes like me logo Genes that share domains with RPL31: view

Function for RPL31 Gene

Molecular function for RPL31 Gene

GENATLAS Biochemistry:
60S ribosomal protein L31,14kDa

Gene Ontology (GO) - Molecular Function for RPL31 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS,IDA 22658674
GO:0003735 structural constituent of ribosome IEA,NAS 12962325
GO:0005515 protein binding IPI 24965446
genes like me logo Genes that share ontologies with RPL31: view
genes like me logo Genes that share phenotypes with RPL31: view

Animal Model Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL31 Gene

Localization for RPL31 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPL31 gene
Compartment Confidence
extracellular 5
cytosol 5
mitochondrion 1
nucleus 1

Gene Ontology (GO) - Cellular Components for RPL31 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005829 cytosol TAS --
GO:0005840 ribosome IEA --
GO:0005925 focal adhesion IDA 21423176
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with RPL31: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL31 Gene

Pathways & Interactions for RPL31 Gene

genes like me logo Genes that share pathways with RPL31: view

Pathways by source for RPL31 Gene

1 KEGG pathway for RPL31 Gene
1 GeneGo (Thomson Reuters) pathway for RPL31 Gene

Gene Ontology (GO) - Biological Process for RPL31 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006364 rRNA processing TAS --
GO:0006412 translation NAS,IEA 12962325
GO:0006413 translational initiation TAS --
GO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS --
genes like me logo Genes that share ontologies with RPL31: view

No data available for SIGNOR curated interactions for RPL31 Gene

Drugs & Compounds for RPL31 Gene

No Compound Related Data Available

Transcripts for RPL31 Gene

Unigene Clusters for RPL31 Gene

Ribosomal protein L31:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL31 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c ^ 4
SP1: - - -
SP2:
SP3: -

Relevant External Links for RPL31 Gene

GeneLoc Exon Structure for
RPL31
ECgene alternative splicing isoforms for
RPL31

Expression for RPL31 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL31 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RPL31 Gene

This gene is overexpressed in Hair follicle (8.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RPL31 Gene



Protein tissue co-expression partners for RPL31 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL31 Gene:

RPL31

SOURCE GeneReport for Unigene cluster for RPL31 Gene:

Hs.469473

Evidence on tissue expression from TISSUES for RPL31 Gene

  • Liver(4.9)
  • Nervous system(4.9)
  • Muscle(4.6)
  • Lung(4.3)
  • Heart(4.1)
  • Eye(3.9)
  • Intestine(3.9)
  • Bone(3.7)
  • Pancreas(3.6)
  • Skin(3.5)
  • Kidney(3.2)
  • Stomach(3.2)
  • Blood(3.1)
  • Bone marrow(2.8)
  • Lymph node(2.8)
  • Adrenal gland(2.7)
  • Spleen(2.7)
  • Thyroid gland(2.7)
  • Gall bladder(2.6)
genes like me logo Genes that share expression patterns with RPL31: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL31 Gene

Orthologs for RPL31 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL31 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC744983 34
  • 100 (n)
-- 35
  • 77 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia RPL31 35
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RPL31 34 35
  • 93.87 (n)
rat
(Rattus norvegicus)
Mammalia Rpl31 34
  • 92.27 (n)
cow
(Bos Taurus)
Mammalia RPL31 34 35
  • 91.2 (n)
mouse
(Mus musculus)
Mammalia Rpl31 34 16 35
  • 90.93 (n)
chicken
(Gallus gallus)
Aves RPL31 34 35
  • 85.07 (n)
lizard
(Anolis carolinensis)
Reptilia RPL31 35
  • 94 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl31 34
  • 81.07 (n)
zebrafish
(Danio rerio)
Actinopterygii rpl31 34 35
  • 79.76 (n)
fruit fly
(Drosophila melanogaster)
Insecta RpL31 36 35
  • 74 (a)
worm
(Caenorhabditis elegans)
Secernentea rpl-31 36 34 35
  • 66.97 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL31A 34 35 37
  • 58.56 (n)
RPL31B 35
  • 57 (a)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER076C 34
  • 58.48 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B02937g 34
  • 57.96 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G26230 34
  • 57.41 (n)
rice
(Oryza sativa)
Liliopsida Os06g0319700 34
  • 59.88 (n)
wheat
(Triticum aestivum)
Liliopsida Ta.13683 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10412 35
  • 74 (a)
OneToOne
bread mold
(Neurospora crassa)
Ascomycetes NCU08344 34
  • 62.76 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl31 34
  • 60.19 (n)
Species where no ortholog for RPL31 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for RPL31 Gene

ENSEMBL:
Gene Tree for RPL31 (if available)
TreeFam:
Gene Tree for RPL31 (if available)

Paralogs for RPL31 Gene

(1) SIMAP similar genes for RPL31 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with RPL31: view

No data available for Paralogs for RPL31 Gene

Variants for RPL31 Gene

Sequence variations from dbSNP and Humsavar for RPL31 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000073466 -- 101,002,603(+) CAGCA(C/T)CTGGA intron-variant
rs1000242396 -- 101,005,949(+) TTATG(C/T)TTTTA intron-variant, downstream-variant-500B
rs1000395132 -- 101,011,366(+) TGCTA(C/T)AAGAA intron-variant
rs1000405701 -- 101,017,268(+) TACAG(C/T)TTATT intron-variant
rs1000408316 -- 101,005,644(+) GTAAC(A/G)AAGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL31 Gene

Variant ID Type Subtype PubMed ID
esv34123 CNV loss 18971310
nsv834316 CNV gain 17160897
nsv961844 CNV duplication 23825009

Variation tolerance for RPL31 Gene

Residual Variation Intolerance Score: 42.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.14; 3.10% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPL31 Gene

Human Gene Mutation Database (HGMD)
RPL31
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL31

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL31 Gene

Disorders for RPL31 Gene

MalaCards: The human disease database

(2) MalaCards diseases for RPL31 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
chancroid
  • ulcus molle, skin
diamond-blackfan anemia
  • diamond-blackfan anemia 1
- elite association - COSMIC cancer census association via MalaCards
Search RPL31 in MalaCards View complete list of genes associated with diseases

Relevant External Links for RPL31

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL31
genes like me logo Genes that share disorders with RPL31: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RPL31 Gene

Publications for RPL31 Gene

  1. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M. … Kenmochi N. (Genome Res. 2002) 2 3 4 64
  2. cDNA sequence of human ribosomal protein L31. (PMID: 2780320) Nobori T. … Carson D.A. (Nucleic Acids Res. 1989) 2 3 4 64
  3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4 64
  4. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PMID: 15592455) Rush J. … Comb M.J. (Nat. Biotechnol. 2005) 3 4 64
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4 64

Products for RPL31 Gene

Sources for RPL31 Gene

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