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Aliases for RPL30P13 Gene

Subcategory (RNA class) for RPL30P13 Gene

lncRNA

Aliases for RPL30P13 Gene

  • Ribosomal Protein L30 Pseudogene 13 2 3 5
  • RPL30_7_1228 3

External Ids for RPL30P13 Gene

ORGUL Members for RPL30P13 Gene

Previous GeneCards Identifiers for RPL30P13 Gene

  • GC12U901116
  • GC12M040463

Summaries for RPL30P13 Gene

GeneCards Summary for RPL30P13 Gene

RPL30P13 (Ribosomal Protein L30 Pseudogene 13) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL30P13 Gene

Genomics for RPL30P13 Gene

Regulatory Elements for RPL30P13 Gene

Enhancers for RPL30P13 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G040054 0.9 Ensembl ENCODE 0.4 +13.7 13706 0.9 TBP PKNOX1 CEBPB EP300 ZIC2 PRDM6 JUND ZNF366 FOS ETV6 RPL30P13 GC12P039941
GH12G040103 1 ENCODE 0.3 -37.0 -37021 4.3 PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 ZNF48 GLIS2 CBX5 ZNF143 KLF13 LOC101930164 LINC02471 LRRK2 SLC2A13 RPL30P13
GH12G040099 0.9 ENCODE 0.3 -31.2 -31221 1.4 PKNOX1 ATF1 FEZF1 ZNF2 TCF12 GATA2 REST ZNF518A ZNF592 ZNF610 LINC02471 SLC2A13 RPL30P13
GH12G040031 0.7 ENCODE 0.3 +35.8 35799 2.3 CTCF PKNOX1 TEAD4 CEBPB RAD21 FOXA1 JUND ZNF316 HDAC2 HNF4G LOC101930164 SLC2A13 LRRK2 RPL30P13 GC12P039941
GH12G040058 0.5 ENCODE 0.4 +9.7 9748 0.9 PRDM6 SCRT2 GFI1B ATF2 SP7 RPL30P13 GC12P039941
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL30P13 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL30P13 Gene

Chromosome:
12
Start:
40,068,240 bp from pter
End:
40,068,663 bp from pter
Size:
424 bases
Orientation:
Minus strand

Genomic View for RPL30P13 Gene

Genes around RPL30P13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL30P13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL30P13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL30P13 Gene

Proteins for RPL30P13 Gene

Post-translational modifications for RPL30P13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL30P13 Gene

Domains & Families for RPL30P13 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL30P13 Gene

Function for RPL30P13 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL30P13 Gene

Localization for RPL30P13 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL30P13 Gene

Pathways & Interactions for RPL30P13 Gene

SuperPathways for RPL30P13 Gene

No Data Available

Interacting Proteins for RPL30P13 Gene

Gene Ontology (GO) - Biological Process for RPL30P13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL30P13 Gene

Drugs & Compounds for RPL30P13 Gene

No Compound Related Data Available

Transcripts for RPL30P13 Gene

mRNA/cDNA for RPL30P13 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL30P13 Gene

No ASD Table

Relevant External Links for RPL30P13 Gene

GeneLoc Exon Structure for
RPL30P13
ECgene alternative splicing isoforms for
RPL30P13

Expression for RPL30P13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL30P13 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL30P13 Gene:

RPL30P13
genes like me logo Genes that share expression patterns with RPL30P13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL30P13 Gene

Orthologs for RPL30P13 Gene

Evolution for RPL30P13 Gene

ENSEMBL:
Gene Tree for RPL30P13 (if available)
TreeFam:
Gene Tree for RPL30P13 (if available)

No data available for Orthologs for RPL30P13 Gene

Paralogs for RPL30P13 Gene

No data available for Paralogs for RPL30P13 Gene

Variants for RPL30P13 Gene

Relevant External Links for RPL30P13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL30P13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL30P13 Gene

Disorders for RPL30P13 Gene

Relevant External Links for RPL30P13

Genetic Association Database (GAD)
RPL30P13

No disorders were found for RPL30P13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL30P13 Gene

Publications for RPL30P13 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. (PMID: 18587394) Barrett J.C. … Daly M.J. (Nat. Genet. 2008) 46 64

Products for RPL30P13 Gene

Sources for RPL30P13 Gene

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