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Aliases for RPL30 Gene

Aliases for RPL30 Gene

  • Ribosomal Protein L30 2 3 5
  • Large Ribosomal Subunit Protein EL30 3 4
  • 60S Ribosomal Protein L30 3
  • L30 3

External Ids for RPL30 Gene

Previous GeneCards Identifiers for RPL30 Gene

  • GC08M098062
  • GC08M099127
  • GC08M098713
  • GC08M099010
  • GC08M099123
  • GC08M094257
  • GC08M099037

Summaries for RPL30 Gene

Entrez Gene Summary for RPL30 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L30E family of ribosomal proteins. It is located in the cytoplasm. This gene is co-transcribed with the U72 small nucleolar RNA gene, which is located in its fourth intron. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL30 Gene

RPL30 (Ribosomal Protein L30) is a Protein Coding gene. Among its related pathways are Viral mRNA Translation and rRNA processing in the nucleus and cytosol. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome.

Gene Wiki entry for RPL30 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL30 Gene

Genomics for RPL30 Gene

Regulatory Elements for RPL30 Gene

Enhancers for RPL30 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G098116 1.1 ENCODE 11.3 -71.2 -71222 3.0 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 RNU6-703P RPL30 RIDA POP1 GC08M098127
GH08G099011 1.2 ENCODE 10.2 -966.9 -966860 2.9 CREB3L1 AGO1 ZFP64 DMAP1 YY1 ZNF143 SP3 TBX21 MEF2D ZNF610 ENSG00000245970 OSR2 ENSG00000271930 RPL30 ENSG00000253180 POP1 VPS13B ENSG00000253562
GH08G098085 1.1 Ensembl ENCODE 10.7 -39.3 -39322 0.4 PKNOX1 ARID4B SIN3A FEZF1 RAD21 RARA SCRT2 ZNF207 ZNF263 ZNF654 ERICH5 POP1 RIDA MATN2 RPS23P1 RPL30 ENSG00000245970 SNORA72 GC08P098099
GH08G097830 1.1 FANTOM5 ENCODE 10.2 +215.0 214982 2.0 HDGF PKNOX1 NFIB SUZ12 BMI1 ZBTB7B ZKSCAN1 MTA3 CTBP1 GATA3 LAPTM4B MATN2 ENSG00000202399 RPS23P1 ENSG00000245970 RPL30 SNORA72 ERICH5 POP1 PIR33604
GH08G098068 0.9 ENCODE 11.5 -22.4 -22379 0.2 PKNOX1 FOXA2 MLX ARID4B DMAP1 YY1 CBX5 MXD4 JUNB PPARG RPL30 SNORA72 ENSG00000245970 MATN2 RPS23P1 ENSG00000202399 LAPTM4B RNU6-914P ERICH5 GC08P098099
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL30 on UCSC Golden Path with GeneCards custom track

Promoters for RPL30 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000227629 969 2601 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF207

Genomic Location for RPL30 Gene

Chromosome:
8
Start:
98,024,851 bp from pter
End:
98,046,469 bp from pter
Size:
21,619 bases
Orientation:
Minus strand

Genomic View for RPL30 Gene

Genes around RPL30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL30 Gene

Proteins for RPL30 Gene

  • Protein details for RPL30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P62888-RL30_HUMAN
    Recommended name:
    60S ribosomal protein L30
    Protein Accession:
    P62888
    Secondary Accessions:
    • B2R591
    • P04645
    • Q502Z6

    Protein attributes for RPL30 Gene

    Size:
    115 amino acids
    Molecular mass:
    12784 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for RPL30 Gene

neXtProt entry for RPL30 Gene

Post-translational modifications for RPL30 Gene

  • Ubiquitination at Lys32, Lys44, isoforms=57, isoforms=68, and Lys87
  • Modification sites at PhosphoSitePlus

Other Protein References for RPL30 Gene

No data available for DME Specific Peptides for RPL30 Gene

Domains & Families for RPL30 Gene

Gene Families for RPL30 Gene

Suggested Antigen Peptide Sequences for RPL30 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P62888

UniProtKB/Swiss-Prot:

RL30_HUMAN :
  • Belongs to the eukaryotic ribosomal protein eL30 family.
Family:
  • Belongs to the eukaryotic ribosomal protein eL30 family.
genes like me logo Genes that share domains with RPL30: view

Function for RPL30 Gene

Molecular function for RPL30 Gene

GENATLAS Biochemistry:
60S ribosomal protein L30,12kDa,likely same as D8S1364E

Gene Ontology (GO) - Molecular Function for RPL30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS 1577483
GO:0003735 structural constituent of ribosome IEA,TAS 1577483
GO:0005515 protein binding IPI 22720776
GO:0035368 selenocysteine insertion sequence binding IEA --
genes like me logo Genes that share ontologies with RPL30: view
genes like me logo Genes that share phenotypes with RPL30: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL30 Gene

Localization for RPL30 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RPL30 gene
Compartment Confidence
extracellular 5
nucleus 5
cytosol 5
mitochondrion 2
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for RPL30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005634 nucleus IDA 22720776
GO:0005829 cytosol TAS --
GO:0005840 ribosome IEA --
GO:0005925 focal adhesion IDA 21423176
genes like me logo Genes that share ontologies with RPL30: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL30 Gene

Pathways & Interactions for RPL30 Gene

genes like me logo Genes that share pathways with RPL30: view

Pathways by source for RPL30 Gene

Gene Ontology (GO) - Biological Process for RPL30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006364 rRNA processing TAS --
GO:0006412 translation IEA,TAS 1577483
GO:0006413 translational initiation TAS --
GO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS --
genes like me logo Genes that share ontologies with RPL30: view

No data available for SIGNOR curated interactions for RPL30 Gene

Drugs & Compounds for RPL30 Gene

No Compound Related Data Available

Transcripts for RPL30 Gene

Unigene Clusters for RPL30 Gene

Ribosomal protein L30:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL30 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c · 4d · 4e · 4f ^ 5a · 5b · 5c ^ 6a · 6b · 6c · 6d
SP1: - - - - - - - -
SP2: - - - - -
SP3: - - - - - -
SP4: - - -
SP5: - - - - -
SP6: - - -
SP7: - -
SP8: -
SP9: - - -
SP10:

Relevant External Links for RPL30 Gene

GeneLoc Exon Structure for
RPL30
ECgene alternative splicing isoforms for
RPL30

Expression for RPL30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL30 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RPL30 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (7.4) and Pancreas (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RPL30 Gene



Protein tissue co-expression partners for RPL30 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL30 Gene:

RPL30

SOURCE GeneReport for Unigene cluster for RPL30 Gene:

Hs.400295

Evidence on tissue expression from TISSUES for RPL30 Gene

  • Liver(4.8)
  • Eye(4.1)
  • Nervous system(4.1)
  • Muscle(4)
  • Intestine(3.7)
  • Skin(3.5)
  • Lung(3.4)
  • Pancreas(3.1)
  • Spleen(3.1)
  • Heart(3)
  • Lymph node(3)
  • Bone marrow(2.9)
  • Adrenal gland(2.8)
  • Blood(2.8)
  • Stomach(2.8)
  • Thyroid gland(2.8)
  • Bone(2.7)
  • Gall bladder(2.7)
  • Kidney(2.6)
genes like me logo Genes that share expression patterns with RPL30: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL30 Gene

Orthologs for RPL30 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPL30 34 35
  • 99.42 (n)
oppossum
(Monodelphis domestica)
Mammalia RPL30 35
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RPL30 34 35
  • 94.2 (n)
mouse
(Mus musculus)
Mammalia Rpl30 34 16 35
  • 94.2 (n)
dog
(Canis familiaris)
Mammalia RPL30 34 35
  • 93.04 (n)
rat
(Rattus norvegicus)
Mammalia LOC100362027 34
  • 93.04 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RPL30 35
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves RPL30 34 35
  • 85.8 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 99 (a)
OneToMany
-- 35
  • 96 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC89963 34
  • 85.59 (n)
Str.750 34
zebrafish
(Danio rerio)
Actinopterygii rpl30 34 35
  • 81.16 (n)
wufa93d05 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003816 34
  • 72.12 (n)
fruit fly
(Drosophila melanogaster)
Insecta RpL30 36 34 35
  • 70.37 (n)
worm
(Caenorhabditis elegans)
Secernentea rpl-30 36 34 35
  • 63.36 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL30 34 35 37
  • 62 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR478W 34
  • 61.67 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E10847g 34
  • 60 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G36240 34
  • 66.67 (n)
soybean
(Glycine max)
eudicotyledons Gma.15471 34
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7503 34
rice
(Oryza sativa)
Liliopsida Os01g0276000 34
  • 69.37 (n)
wheat
(Triticum aestivum)
Liliopsida Ta.3371 34
corn
(Zea mays)
Liliopsida Zm.12150 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 79 (a)
OneToOne
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl3002 34
  • 62.09 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU08963 34
  • 60.58 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.13337 34
Species where no ortholog for RPL30 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for RPL30 Gene

ENSEMBL:
Gene Tree for RPL30 (if available)
TreeFam:
Gene Tree for RPL30 (if available)

Paralogs for RPL30 Gene

No data available for Paralogs for RPL30 Gene

Variants for RPL30 Gene

Sequence variations from dbSNP and Humsavar for RPL30 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000012824 -- 98,046,376(+) TCGAG(-/T)TTTCC upstream-variant-2KB
rs1000334322 -- 98,042,146(+) ACATG(C/T)ATGGT intron-variant
rs1000353080 -- 98,046,042(+) CCCCT(A/C)TGCGG upstream-variant-2KB
rs1001280450 -- 98,042,879(+) CTTCA(A/G)AAAGT intron-variant
rs1001584278 -- 98,042,540(+) ATTCT(A/G)TCTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL30 Gene

Variant ID Type Subtype PubMed ID
esv2674440 CNV deletion 23128226

Variation tolerance for RPL30 Gene

Residual Variation Intolerance Score: 49.5% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPL30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL30 Gene

Disorders for RPL30 Gene

Relevant External Links for RPL30

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL30

No disorders were found for RPL30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL30 Gene

Publications for RPL30 Gene

  1. Crystallization and preliminary X-ray structure analysis of human ribosomal protein L30e. (PMID: 22139155) Kawaguchi A. … Tanaka I. (Acta Crystallogr. F 2011) 3 4 64
  2. Medulloblastoma outcome is adversely associated with overexpression of EEF1D, RPL30, and RPS20 on the long arm of chromosome 8. (PMID: 16968546) De Bortoli M. … Kim J.Y. (BMC Cancer 2006) 3 22 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The human ribosomal protein genes: sequencing and comparative analysis of 73 genes. (PMID: 11875025) Yoshihama M. … Kenmochi N. (Genome Res. 2002) 3 4 64
  5. The mapping of seven intron-containing ribosomal protein genes shows they are unlinked in the human genome. (PMID: 1577483) Feo S. … Fried M. (Genomics 1992) 2 3 64

Products for RPL30 Gene

Sources for RPL30 Gene

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