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Aliases for RPL29P2 Gene

Subcategory (RNA class) for RPL29P2 Gene

lncRNA

Aliases for RPL29P2 Gene

  • Ribosomal Protein L29 Pseudogene 2 2 3 5
  • RPL29_10_1510 3

External Ids for RPL29P2 Gene

ORGUL Members for RPL29P2 Gene

Previous GeneCards Identifiers for RPL29P2 Gene

  • GC17P008123
  • GC17P008397
  • GC17P007600
  • GC17U900206
  • GC17P007602
  • GC17P007658

Summaries for RPL29P2 Gene

GeneCards Summary for RPL29P2 Gene

RPL29P2 (Ribosomal Protein L29 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL29P2 Gene

Genomics for RPL29P2 Gene

Regulatory Elements for RPL29P2 Gene

Enhancers for RPL29P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F007754 0.6 FANTOM5 0.8 -0.1 -77 0.2 MAZ PRDM10 ZNF652 ZBTB17 WRAP53 SLC35G6 DNAH2 EFNB3 ALOX15B CYB5D1 TMEM88 NAA38 NLGN2 RPL29P2
GH17F007749 0.2 ENCODE 0.8 -3.8 -3789 1.8 ZNF493 JUN FEZF1 TSHZ1 REST EP300 ZEB1 ZNF335 ZNF664 JUND NEURL4 DNAH2 EFNB3 WRAP53 ALOX15B TMEM88 CYB5D1 NAA38 RPL29P2
GH17F007755 0.2 ENCODE 0.8 +1.0 1011 1.0 KLF1 POLR2A USF2 DNAH2 ATP1B2 ALOX15B EFNB3 WRAP53 GUCY2D CNTROB TRAPPC1 KCNAB3 CHRNB1
GH17F007747 0.9 Ensembl ENCODE 0.4 -6.3 -6299 1.8 PKNOX1 NFRKB ZBTB40 ZNF121 ZNF335 GLIS2 ZNF366 RCOR1 EGR2 SP3 DVL2 DNAH2 EFNB3 WRAP53 PFAS ALOX15B CYB5D1 TMEM88 NAA38 RPL29P2
GH17F007745 1 Ensembl ENCODE 0.4 -8.3 -8302 1.2 NFRKB INSM2 KLF17 FEZF1 RAD21 ZEB1 RFX5 ZNF366 FOS DEK RPL29P2 DNAH2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL29P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL29P2 Gene

Chromosome:
17
Start:
7,754,320 bp from pter
End:
7,754,976 bp from pter
Size:
657 bases
Orientation:
Plus strand

Genomic View for RPL29P2 Gene

Genes around RPL29P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL29P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL29P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL29P2 Gene

Proteins for RPL29P2 Gene

Post-translational modifications for RPL29P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL29P2 Gene

Domains & Families for RPL29P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL29P2 Gene

Function for RPL29P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL29P2 Gene

Localization for RPL29P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL29P2 Gene

Pathways & Interactions for RPL29P2 Gene

SuperPathways for RPL29P2 Gene

No Data Available

Interacting Proteins for RPL29P2 Gene

Gene Ontology (GO) - Biological Process for RPL29P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL29P2 Gene

Transcripts for RPL29P2 Gene

mRNA/cDNA for RPL29P2 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL29P2 Gene

Ribosomal protein L29 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL29P2 Gene

No ASD Table

Relevant External Links for RPL29P2 Gene

GeneLoc Exon Structure for
RPL29P2
ECgene alternative splicing isoforms for
RPL29P2

Expression for RPL29P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL29P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL29P2 Gene:

RPL29P2

SOURCE GeneReport for Unigene cluster for RPL29P2 Gene:

Hs.658086
genes like me logo Genes that share expression patterns with RPL29P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL29P2 Gene

Orthologs for RPL29P2 Gene

Evolution for RPL29P2 Gene

ENSEMBL:
Gene Tree for RPL29P2 (if available)
TreeFam:
Gene Tree for RPL29P2 (if available)

No data available for Orthologs for RPL29P2 Gene

Paralogs for RPL29P2 Gene

No data available for Paralogs for RPL29P2 Gene

Variants for RPL29P2 Gene

Sequence variations from dbSNP and Humsavar for RPL29P2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111815824 -- 7,752,503(+) CAGGA(A/G)ATCGA intron-variant, upstream-variant-2KB
rs111904672 -- 7,753,533(+) TTTAC(A/G)TGGGA intron-variant, upstream-variant-2KB
rs1136827 -- 7,754,369(+) GCTTC(A/G)GGAGC intron-variant, nc-transcript-variant
rs113822396 -- 7,752,651(+) CTTGC(A/G)GTGAG intron-variant, upstream-variant-2KB
rs115340857 -- 7,754,857(+) AGATA(C/T)CTCTG intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL29P2 Gene

Variant ID Type Subtype PubMed ID
nsv962252 CNV duplication 23825009

Relevant External Links for RPL29P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL29P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL29P2 Gene

Disorders for RPL29P2 Gene

Relevant External Links for RPL29P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL29P2

No disorders were found for RPL29P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL29P2 Gene

Publications for RPL29P2 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL29P2 Gene

Sources for RPL29P2 Gene

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