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RPL29 Gene

protein-coding   GIFtS: 59
GCID: GC03M052029

Ribosomal Protein L29

(Previous name: ribosomal protein L29 pseudogene 10)
(Previous symbol: RPL29P10)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ribosomal Protein L291 2     HIP2 5
Cell Surface Heparin-Binding Protein HIP1 2 3     Ribosomal Protein L29 Pseudogene 101
RPL29P101 2     HUMRPL292
60S Ribosomal Protein L291 2     L292
Heparin/Heparan Sulfate-Binding Protein1 2     RPL29_3_3702
Heparin/Heparan Sulfate-Interacting Protein1 2     Ribosomal Protein YL43 Homologue2
HP/HS-Interacting Protein1 2     

External Ids:    HGNC: 103311   Entrez Gene: 61592   Ensembl: ENSG000001622447   OMIM: 6018325   UniProtKB: P479143   

Export aliases for RPL29 gene to outside databases

Previous GC identifers: GC03M051120 GC03M051280 GC03M051879 GC03M051986 GC03M052002 GC03M052028


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for RPL29 Gene:
Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit.
Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This
gene encodes a cytoplasmic ribosomal protein that is a component of the 60S subunit. The protein belongs to the
L29E family of ribosomal proteins. The protein is also a peripheral membrane protein expressed on the cell
surface that directly binds heparin. Although this gene was previously reported to map to 3q29-qter, it is
believed that it is located at 3p21.3-p21.2. As is typical for genes encoding ribosomal proteins, there are
multiple processed pseudogenes of this gene dispersed through the genome. (provided by RefSeq, Jul 2008)

GeneCards Summary for RPL29 Gene:
RPL29 (ribosomal protein L29) is a protein-coding gene. GO annotations related to this gene include heparin binding and RNA binding.

Gene Wiki entry for RPL29 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000003.11  NC_018914.2  NT_022517.19  
Regulatory elements:
   Regulatory transcription factor binding sites in the RPL29 gene promoter:
         AML1a   p53   SREBP-1c   Pax-2   Pax-2a   HNF-4alpha2   SREBP-1b   HNF-4alpha1   SREBP-1a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidRPL29 promoter sequence
   Search Chromatin IP Primers for RPL29

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat RPL29


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p21.3-p21.2   Ensembl cytogenetic band:  3p21.2   HGNC cytogenetic band: 3p21.3-p21.2

RPL29 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
RPL29 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03M052029:  view genomic region     (about GC identifiers)

Start:
52,027,616 bp from pter      End:
52,029,958 bp from pter
Size:
2,343 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: RL29_HUMAN, P47914 (See protein sequence)
Recommended Name: 60S ribosomal protein L29  
Size: 159 amino acids; 17752 Da
1 PDB 3D structure from and Proteopedia for RPL29:
3J3B (3D)    
Secondary accessions: A8K0H3 B2R4M8 Q6IPY3

Explore the universe of human proteins at neXtProt for RPL29: NX_P47914

Explore proteomics data for RPL29 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys33, Lys38, Lys56, Lys63, Lys73
  • Modification sites at PhosphoSitePlus

  • See RPL29 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_000983.1  
    ENSEMBL proteins: 
     ENSP00000294189   ENSP00000418868   ENSP00000419333   ENSP00000418153   ENSP00000420673  
     ENSP00000417048   ENSP00000418346   ENSP00000418839  
    Reactome Protein details: P47914

    RPL29 Human Recombinant Protein Products:

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    Novus Biologicals RPL29 Lysates
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    Cloud-Clone Corp. Proteins for RPL29

     
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    antibodies-online proteins for RPL29 (12 products) 

     
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    antibodies-online kits for RPL29 (10 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    RPL: L ribosomal proteins

    1 InterPro protein domain:
     IPR002673 Ribosomal_L29e

    Graphical View of Domain Structure for InterPro Entry P47914

    ProtoNet protein and cluster: P47914

    1 Blocks protein domain: IPB002673 Ribosomal L29e protein

    UniProtKB/Swiss-Prot: RL29_HUMAN, P47914
    Similarity: Belongs to the ribosomal protein L29e family


    Find genes that share domains with RPL29           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:
         Genatlas biochemistry entry for RPL29:
    60S ribosomal protein L29,identical to a cell surface heparin/heparan (HP/HS) binding protein

         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003723RNA binding TAS8597591
    GO:0003735structural constituent of ribosome NAS12962325
    GO:0008201heparin binding IEA--
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with RPL29           About GenesLikeMe


    Phenotypes:
         6 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Rpl29):
     cellular  embryogenesis  growth/size/body  mortality/aging  reproductive system 
     skeleton 

    Find genes that share phenotypes with RPL29           About GenesLikeMe

    Animal Models:
         MGI mouse knock-outs for RPL29: Rpl29tm1Udel Rpl29tm2Udel

       genOway: Develop your customized and physiologically relevant rodent model for RPL29

    miRNA
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    miRTarBase miRNAs that target RPL29:
    hsa-mir-615-3p (MIRT040029), hsa-mir-186-5p (MIRT045203), hsa-mir-1914-5p (MIRT035785), hsa-mir-760 (MIRT036750), hsa-mir-92a-1-5p (MIRT038917), hsa-mir-652-3p (MIRT039506), hsa-mir-331-3p (MIRT043525), hsa-mir-125b-5p (MIRT005011)

    Block miRNA regulation of human, mouse, rat RPL29 using miScript Target Protectors
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPL29


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol5
    nucleus2

    Gene Ontology (GO): 4 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005829cytosol TAS--
    GO:0005840ribosome ----
    GO:0022625cytosolic large ribosomal subunit IDA12962325

    Find genes that share ontologies with RPL29           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for RPL29 About    
    See pathways by source

    SuperPathSelected contained pathways About (see all per SuperPath)
    1CFTR translational fidelity class I mutations
    CFTR translational fidelity class I mutations 0.60
    Ribosome0.54
    Cytoplasmic Ribosomal Proteins0.60
    2Influenza Viral RNA Transcription and Replication
    Viral mRNA Translation0.94
    Eukaryotic Translation Initiation0.89
    Peptide chain elongation0.94
    Cap-dependent Translation Initiation0.89
    Nonsense Mediated Decay Independent of the Exon Junction Complex0.94
    Nonsense Mediated Decay Enhanced by the Exon Junction Complex0.89
    Formation of a pool of free 40S subunits0.94
    Nonsense-Mediated Decay0.89
    3Gene Expression
    Gene Expression0.40
    4Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
    Metabolism of proteins0.30
    5Disease
    Disease


    Find genes that share SuperPaths with RPL29           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 GeneGo (Thomson Reuters) Pathway for RPL29
        CFTR translational fidelity (class I mutations)

    1 BioSystems Pathway for RPL29
        Cytoplasmic Ribosomal Proteins


    Selected Reactome Pathways for RPL29 (see all 9)
        Peptide chain elongation
    Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
    Viral mRNA Translation
    GTP hydrolysis and joining of the 60S ribosomal subunit
    SRP-dependent cotranslational protein targeting to membrane


    1 Kegg Pathway  (Kegg details for RPL29):
        Ribosome

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for RPL29
    Interactions:

        GeneGlobe Interaction Network for RPL29

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for RPL29 (P479141, 2, 3 ENSP000002941894) via UniProtKB, MINT, STRING, and/or I2D (see all 410)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SYBUQ9NX952, 3, ENSP000002766464MINT-63765 I2D: score=5 STRING: ENSP00000276646
    CHD3Q128732, 3MINT-63766 I2D: score=5 
    ENSG00000235068Q018603, ENSP000004050414I2D: score=1 STRING: ENSP00000405041
    ENSG00000206454Q018603I2D: score=1 
    ENSG00000229094Q018603I2D: score=1 
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 14):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS--
    GO:0006412translation TAS--
    GO:0006413translational initiation TAS--
    GO:0006414translational elongation TAS--
    GO:0006415translational termination TAS--

    Find genes that share ontologies with RPL29           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for RPL29 (RL29)

    1 HMDB Compound for RPL29    About this table
    CompoundSynonyms CAS #PubMed Ids
    HeparinArteven (see all 17)9005-49-6--

    7 Novoseek inferred chemical compound relationships for RPL29 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    heparan sulfate 86.5 30 9546743 (2), 10383165 (2), 18299334 (2), 9371517 (2) (see all 15)
    heparin 74.9 70 10383165 (2), 19747524 (2), 9050848 (2), 10516434 (2) (see all 22)
    keratan sulfate 67.6 1 9737974 (1)
    dermatan sulfate 64.5 1 9737974 (1)
    chondroitin sulfate 56.4 1 9737974 (1)
    hyaluronic acid 49.9 1 9737974 (1)
    butyrate 32.7 2 14729579 (2)



    Find genes that share compounds with RPL29           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for RPL29 gene: 
    NM_000992.2  

    Unigene Cluster for RPL29:

    Ribosomal protein L29
    Hs.425125  [show with all ESTs]
    Unigene Representative Sequence: BM554029
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000294189(uc003dcs.3) ENST00000466397 ENST00000480306 ENST00000479017
    ENST00000495383 ENST00000475248 ENST00000492277 ENST00000481629 ENST00000486565

    miRNA
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    5 qRT-PCR Assays for microRNAs that regulate RPL29:
    hsa-miR-1237 hsa-miR-493* hsa-let-7g* hsa-let-7a-2* hsa-miR-1910
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat RPL29

    Additional mRNA sequence: 

    AK289538.1 AK311884.1 BC008926.2 BC018943.2 BC070190.1 BC070481.1 BC071663.1 BC071909.1 
    U10248.1 U49083.1 Z49148.1 

    Selected DOTS entries (see all 44):

    DT.91778446  DT.95329876  DT.95343174  DT.97868485  DT.100720249  DT.100720264  DT.95343206  DT.100720257 
    DT.40209927  DT.100059878  DT.91778434  DT.120883720  DT.95122562  DT.91817992  DT.100720262  DT.95343195 
    DT.120883806  DT.87079193  DT.100720246  DT.120923011  DT.91778438  DT.100059882  DT.100721336  DT.97857529 

    Selected AceView cDNA sequences (see all 2592):

    BM874301 BC007234 BQ058747 BC050650 CD724094 CD108280 BU165214 AI937876 
    BQ051024 BG025211 BQ219379 BQ921245 BF718231 BI029411 BM844250 BM549068 
    AW160572 AI648493 CB270191 BQ058478 BQ882495 BI837200 BQ719876 AW957970 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for RPL29    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4
    SP1:                                    
    SP2:                    -     -         
    SP3:                                    


    ECgene alternative splicing isoforms for RPL29

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    RPL29 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GGGCTGGGGT
    RPL29 Expression
    About this image

    RPL29 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    RPL29 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.425125
        Custom PCR Arrays for RPL29
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for RPL29

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for RPL29 gene from Selected species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Rpl295 ribosomal protein L29   --   9 (57.49 cM) 106429454 
    chicken
    (Gallus gallus)
    Aves RPL291 ribosomal protein L29 87.3(n)
    98.41(a)
      770249  NM_001171677.1  NP_001165148.1 
    lizard
    (Anolis carolinensis)
    Reptilia RPL296
    ribosomal protein L29
    94(a)
    1 ↔ 1
    2(154528207-154531195)
    African clawed frog
    (Xenopus laevis)
    Amphibia 480246472   -- 85.49(n)    48024647 
    zebrafish
    (Danio rerio)
    Actinopterygii CK399894.12   -- 83.33(n)    CK399894.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta RpL296
    Ribosomal protein L29
    49(a)
    1 ↔ 1
    2R(17181274-17181909)
    worm
    (Caenorhabditis elegans)
    Secernentea rpl-296
    Protein RPL-29, isoform a
    55(a)
    1 ↔ 1
    IV(13882194-13882663) WBGene00004443
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes RPL296
    Protein component of the large (60S) ribosomal sub...
    66(a)
    1 ↔ 1
    VI(223258-223437) YFR032C-A
    soybean
    (Glycine max)
    eudicotyledons BG359817.12   -- 78.27(n)    BG359817.1 
    rice
    (Oryza sativa)
    Liliopsida Os.10822 Oryza sativa (japonica cultivar-group) cDNA clone0 more 80.88(n)    AK121735.1 


    ENSEMBL Gene Tree for RPL29 (if available)
    TreeFam Gene Tree for RPL29 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for RPL29 gene

    Find genes that share paralogs with RPL29           About GenesLikeMe


    Selected Pseudogenes.org Pseudogenes for RPL29 (see all 40)
    PGOHUM00000238695 PGOHUM00000242205 PGOHUM00000242320 PGOHUM00000242604 PGOHUM00000239382


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for RPL29 (see all 127)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs3238641,2
    C,F,A,H--52027330(-) CTCCCA/GGGTTC 1 -- ds50015Minor allele frequency- G:0.07EA NA WA CSA 1503
    rs1433019541,2
    C,F--52027474(+) CCGAGC/-TTCCC 1 -- ds50011Minor allele frequency- -:0.02NS 150
    rs1419686781,2
    C--52027485(+) GCCCCC/-AATCA 1 -- ds50011Minor allele frequency- -:0.01NS 150
    rs1846106001,2
    --52027583(+) CTTCTC/TCCACA 1 -- ds50010--------
    rs1396024121,2
    --52027611(+) CAAACC/TCATCC 1 -- ds50010--------
    rs1905732611,2
    --52027618(+) ATCCCC/TAGGAT 1 -- ds50010--------
    rs2003740331,2
    F--52027714(+) AGGGGC/TGGGGG 1 -- ut311Minor allele frequency- T:0.06EU 141
    rs2006486071,2
    --52027715(+) GGGGCA/GGGGGT 1 -- ut310--------
    rs2015494291,2
    C--52027723(+) GGTGGG/AGGGTC 1 -- ut311Minor allele frequency- A:0.00EU 593
    rs115593201,2
    C--52027776(+) TGAAGC/G/TCTTTG 3 T P A mis1 ese31EU 1323

    HapMap Linkage Disequilibrium report for RPL29 (52027616 - 52029958 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for RPL29:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv508922CNV Insertion20534489
    nsv876780CNV Loss21882294
    nsv520211CNV Gain19592680
    nsv519445CNV Gain+Loss19592680

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing RPL29
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 601832    OMIM disorders: --


    Find genes that share disorders with RPL29           About GenesLikeMe

    5 Novoseek inferred disease relationships for RPL29 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    carcinoma 16.9 2 9788632 (1)
    colon cancer 11.7 3 16475173 (1), 14729579 (1)
    metastasis 0 1 10383165 (1)
    tumors 0 2 9788632 (1)
    cancer 0 1 12058038 (1)


    Export disorders for RPL29 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for RPL29 gene, integrated from 10 sources (see all 85):
    (articles sorted by number of sources associating them with RPL29)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel cDNA encoding a human homologue of ribosomal protein L29. (PubMed id 8597591)1, 2, 3, 9 Law P.T.... Waye M.M.Y. (Biochim. Biophys. Acta 1996)
    2. cDNA cloning and expression of HIP, a novel cell surface heparan sulfate/heparin-binding protein of human uterine epithelial cells and cell lines. (PubMed id 8662616)1, 2, 9 Liu S.... Carson D.D. (J. Biol. Chem. 1996)
    3. Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry. (PubMed id 17370265)1, 2 Denis N.J.... Figeys D. (Proteomics 2007)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing. (PubMed id 12962325)1, 2 Odintsova T.I....Karpova G.G. (J. Protein Chem. 2003)
    6. Analysis of eluted peptides from type 1 diabetes-susceptible HLA class II molecules identified novel islet protein, heparin/heparan sulfate-interacting protein. (PubMed id 15721314)1, 9 Nakanishi K....Matsushita H. (Biochem. Biophys. Res. Commun. 2005)
    7. Mapping of the human ribosomal large subunit protein gene RPL29 to human chromosome 3q29-qter. (PubMed id 9403071)1, 9 Garcia-Barcelo M....Waye M.M. (Genomics 1997)
    8. Heparin/heparan sulfate interacting protein expression and functions in human breast cancer cells and normal breast epithelia. (PubMed id 9371517)1, 9 Jacobs A.L....Carson D.D. (Cancer Res. 1997)
    9. Cell surface expression of HIP, a novel heparin/heparan sulfate binding protein, of human uterine epithelial cells and cell lines. (PubMed id 8662617)1, 9 Rohde L.H....Carson D.D. (J. Biol. Chem. 1996)
    10. Repression of HIP/RPL29 expression induces differentiation in colon cancer cells. (PubMed id 16475173)1, 9 Liu J.J....Hooi S.C. (J. Cell. Physiol. 2006)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 6159 HGNC: 10331 AceView: RPL29andMGC15429 Ensembl:ENSG00000162244 euGenes: HUgn6159
    ECgene: RPL29 Kegg: 6159 H-InvDB: RPL29

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for RPL29 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for RPL29 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for RPL29 gene:
    Search GeneIP for patents involving RPL29

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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