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Aliases for RPL28P4 Gene

Subcategory (RNA class) for RPL28P4 Gene

lncRNA

Aliases for RPL28P4 Gene

  • Ribosomal Protein L28 Pseudogene 4 2 3
  • RPL28_1_1435 3
  • AC066616.1 5

External Ids for RPL28P4 Gene

ORGUL Members for RPL28P4 Gene

Previous GeneCards Identifiers for RPL28P4 Gene

  • GC15P056281
  • GC15P058493

Summaries for RPL28P4 Gene

GeneCards Summary for RPL28P4 Gene

RPL28P4 (Ribosomal Protein L28 Pseudogene 4) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL28P4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL28P4 Gene

Genomics for RPL28P4 Gene

GeneHancer (GH) Regulatory Elements for RPL28P4 Gene

Promoters and enhancers for RPL28P4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I058201 Enhancer 0.2 ENCODE 550.8 +1.2 1196 1 RPL28P4 GC15M058232 ALDH1A2
GH15I058202 Enhancer 0.9 ENCODE 0.8 +3.3 3261 1.8 PKNOX1 ATF1 ARNT NCOA2 TCF12 ZNF766 FOS MEF2D MAFF GMEB1 RPL28P4 GC15M058232 ALDH1A2
GH15I058228 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +28.7 28659 2.3 CTCF USF1 FOXA2 RB1 MAX RAD21 CHAMP1 CC2D1A ADNP VEZF1 SLTM SNORD3P1 LOC101928725 MINDY2 RNF111 LIPC GC15M058232 RPL28P4 LOC101928635 ALDH1A2
GH15I058178 Enhancer 0.9 ENCODE 0.3 -20.7 -20730 2.1 HDGF PKNOX1 SMAD1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 CAVIN1 SLTM LOC102724683 RPL28P4 AQP9 ALDH1A2
GH15I058208 Enhancer 0.6 Ensembl ENCODE 0.4 +8.7 8656 1.4 FOSL1 ZNF157 SNORD3P1 LOC101928725 MINDY2 LIPC RPL28P4 GC15M058232 ALDH1A2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL28P4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL28P4 Gene

Genomic Locations for RPL28P4 Gene
chr15:58,200,606-58,201,018
(GRCh38/hg38)
Size:
413 bases
Orientation:
Plus strand
chr15:58,492,805-58,493,217
(GRCh37/hg19)

Genomic View for RPL28P4 Gene

Genes around RPL28P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL28P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL28P4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL28P4 Gene

Proteins for RPL28P4 Gene

Post-translational modifications for RPL28P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL28P4 Gene

Domains & Families for RPL28P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL28P4 Gene

Function for RPL28P4 Gene

Phenotypes From GWAS Catalog for RPL28P4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL28P4 Gene

Localization for RPL28P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL28P4 Gene

Pathways & Interactions for RPL28P4 Gene

SuperPathways for RPL28P4 Gene

No Data Available

Interacting Proteins for RPL28P4 Gene

Gene Ontology (GO) - Biological Process for RPL28P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL28P4 Gene

Drugs & Compounds for RPL28P4 Gene

No Compound Related Data Available

Transcripts for RPL28P4 Gene

mRNA/cDNA for RPL28P4 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL28P4 Gene

No ASD Table

Relevant External Links for RPL28P4 Gene

GeneLoc Exon Structure for
RPL28P4
ECgene alternative splicing isoforms for
RPL28P4

Expression for RPL28P4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL28P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL28P4 Gene:

RPL28P4
genes like me logo Genes that share expression patterns with RPL28P4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL28P4 Gene

Orthologs for RPL28P4 Gene

Evolution for RPL28P4 Gene

ENSEMBL:
Gene Tree for RPL28P4 (if available)
TreeFam:
Gene Tree for RPL28P4 (if available)

No data available for Orthologs for RPL28P4 Gene

Paralogs for RPL28P4 Gene

No data available for Paralogs for RPL28P4 Gene

Variants for RPL28P4 Gene

Additional Variant Information for RPL28P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL28P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL28P4 Gene

Disorders for RPL28P4 Gene

Additional Disease Information for RPL28P4

Genetic Association Database
(GAD)

No disorders were found for RPL28P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL28P4 Gene

Publications for RPL28P4 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Genome-wide association study identifies multiple loci influencing human serum metabolite levels. (PMID: 22286219) Kettunen J … Ripatti S (Nature genetics 2012) 44 58
  3. Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. (PMID: 22399527) Kristiansson K … Salomaa V (Circulation. Cardiovascular genetics 2012) 44 58
  4. Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. (PMID: 22359512) Demirkan A … EUROSPAN consortium (PLoS genetics 2012) 44 58
  5. Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits. (PMID: 21943158) Middelberg RP … Whitfield JB (BMC medical genetics 2011) 44 58

Products for RPL28P4 Gene

Sources for RPL28P4 Gene

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