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Aliases for RPL23P8 Gene

Aliases for RPL23P8 Gene

  • Ribosomal Protein L23 Pseudogene 8 2 3
  • RPL23_4_790 3
  • AC005251.3 5

External Ids for RPL23P8 Gene

Previous GeneCards Identifiers for RPL23P8 Gene

  • GC07U902599
  • GC17M037004
  • GC07P020866
  • GC07P020752

Summaries for RPL23P8 Gene

GeneCards Summary for RPL23P8 Gene

RPL23P8 (Ribosomal Protein L23 Pseudogene 8) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23P8 Gene

Genomics for RPL23P8 Gene

Regulatory Elements for RPL23P8 Gene

Enhancers for RPL23P8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F021426 0.9 ENCODE 12.1 +600.4 600430 3.3 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 RPL23P8 SP4 CDCA7L ENSG00000229949
GH07F020214 1.4 FANTOM5 Ensembl ENCODE 12.1 -609.1 -609146 8.4 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 SIN3A ARID4B DMAP1 TWISTNB RPL21P75 RPL23P8 MACC1 LOC101927769
GH07F020177 0.3 FANTOM5 12.1 -649.4 -649387 0.3 ATF1 PKNOX1 ARNT CREB3L1 SIN3A ZNF766 ZNF143 FOS KLF13 TBX21 RPL23P8 ITGB8 TWISTNB MACC1 LOC100506098 MACC1-AS1
GH07F020835 0.2 ENCODE 0.4 +8.1 8121 0.6 PKNOX1 CBX3 POLR2A E2F6 L3MBTL2 NRF1 ELF1 GABPA TFDP1 POLR2H LINC01162 RPL23P8
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL23P8 on UCSC Golden Path with GeneCards custom track

Promoters for RPL23P8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001889747 103 399 ZBTB40 GABPA

Genomic Location for RPL23P8 Gene

Chromosome:
7
Start:
20,827,298 bp from pter
End:
20,827,820 bp from pter
Size:
523 bases
Orientation:
Plus strand

Genomic View for RPL23P8 Gene

Genes around RPL23P8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23P8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23P8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23P8 Gene

Proteins for RPL23P8 Gene

Post-translational modifications for RPL23P8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23P8 Gene

Domains & Families for RPL23P8 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23P8 Gene

Function for RPL23P8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23P8 Gene

Localization for RPL23P8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23P8 Gene

Pathways & Interactions for RPL23P8 Gene

SuperPathways for RPL23P8 Gene

No Data Available

Interacting Proteins for RPL23P8 Gene

Gene Ontology (GO) - Biological Process for RPL23P8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23P8 Gene

Transcripts for RPL23P8 Gene

mRNA/cDNA for RPL23P8 Gene

(1) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23P8 Gene

Ribosomal protein L23 pseudogene 8:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23P8 Gene

No ASD Table

Relevant External Links for RPL23P8 Gene

GeneLoc Exon Structure for
RPL23P8
ECgene alternative splicing isoforms for
RPL23P8

Expression for RPL23P8 Gene

mRNA expression in normal human tissues for RPL23P8 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23P8 Gene:

RPL23P8

SOURCE GeneReport for Unigene cluster for RPL23P8 Gene:

Hs.722187
genes like me logo Genes that share expression patterns with RPL23P8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL23P8 Gene

Orthologs for RPL23P8 Gene

Evolution for RPL23P8 Gene

ENSEMBL:
Gene Tree for RPL23P8 (if available)
TreeFam:
Gene Tree for RPL23P8 (if available)

No data available for Orthologs for RPL23P8 Gene

Paralogs for RPL23P8 Gene

No data available for Paralogs for RPL23P8 Gene

Variants for RPL23P8 Gene

Sequence variations from dbSNP and Humsavar for RPL23P8 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10274248 -- 20,826,702(+) TTAGG(A/G)AGGAA upstream-variant-2KB
rs111472563 -- 20,827,719(+) CCCCG(C/G)ATTGT nc-transcript-variant
rs111868884 -- 20,827,718(+) CCCCC(C/G)GATTG nc-transcript-variant
rs111880895 -- 20,827,018(+) ATATT(A/C)GATTG upstream-variant-2KB
rs112811546 -- 20,827,607(+) GGCGT(A/G)TTTCT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23P8 Gene

Variant ID Type Subtype PubMed ID
nsv1030726 CNV gain 25217958

Relevant External Links for RPL23P8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23P8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23P8 Gene

Disorders for RPL23P8 Gene

Relevant External Links for RPL23P8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL23P8

No disorders were found for RPL23P8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23P8 Gene

Publications for RPL23P8 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64

Products for RPL23P8 Gene

Sources for RPL23P8 Gene

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