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Aliases for RPL23P3 Gene

Subcategory (RNA class) for RPL23P3 Gene

lncRNA

Aliases for RPL23P3 Gene

  • Ribosomal Protein L23 Pseudogene 3 2 3
  • RP4-641G12.3 5
  • RPL23_1_65 3

External Ids for RPL23P3 Gene

ORGUL Members for RPL23P3 Gene

Previous GeneCards Identifiers for RPL23P3 Gene

  • GC01P078906
  • GC01P079132

Summaries for RPL23P3 Gene

GeneCards Summary for RPL23P3 Gene

RPL23P3 (Ribosomal Protein L23 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23P3 Gene

Genomics for RPL23P3 Gene

Regulatory Elements for RPL23P3 Gene

Enhancers for RPL23P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F079322 1.1 Ensembl ENCODE 4.1 +657.1 657077 1.9 JUN MAX ZNF140 CEBPG ZEB1 RFX5 HIC1 GATA3 CTBP1 FOSL2 RPL23P3 LOC105378811 LOC105378812
GH01F078676 0.6 ENCODE 0.4 +10.3 10270 0.1 CTCF GATA3 ZNF654 ZNF143 SMC3 TRIM22 RAD21 RPL23P3 LOC652549
GH01F078649 0.7 ENCODE 0.3 -15.6 -15611 2.9 TBP TAF1 WRNIP1 CHD1 RELA YY1 POLR2A IKZF1 STAT3 NBN IFI44 RPL23P3
GH01F078692 0.6 ENCODE 0.3 +26.3 26295 0.9 JUND JUN BHLHE40 CEBPB FOS EP300 TCF7L2 RPL23P3 LOC652549
GH01F078688 0.6 FANTOM5 0.3 +22.6 22596 0.2 CTCF ZNF654 CEBPB SMC3 RAD21 RPL23P3 LOC652549
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23P3 Gene

Chromosome:
1
Start:
78,666,271 bp from pter
End:
78,666,697 bp from pter
Size:
427 bases
Orientation:
Plus strand

Genomic View for RPL23P3 Gene

Genes around RPL23P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23P3 Gene

Proteins for RPL23P3 Gene

Post-translational modifications for RPL23P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23P3 Gene

Domains & Families for RPL23P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23P3 Gene

Function for RPL23P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23P3 Gene

Localization for RPL23P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23P3 Gene

Pathways & Interactions for RPL23P3 Gene

SuperPathways for RPL23P3 Gene

No Data Available

Interacting Proteins for RPL23P3 Gene

Gene Ontology (GO) - Biological Process for RPL23P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23P3 Gene

Transcripts for RPL23P3 Gene

mRNA/cDNA for RPL23P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23P3 Gene

No ASD Table

Relevant External Links for RPL23P3 Gene

GeneLoc Exon Structure for
RPL23P3
ECgene alternative splicing isoforms for
RPL23P3

Expression for RPL23P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23P3 Gene:

RPL23P3
genes like me logo Genes that share expression patterns with RPL23P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL23P3 Gene

Orthologs for RPL23P3 Gene

Evolution for RPL23P3 Gene

ENSEMBL:
Gene Tree for RPL23P3 (if available)
TreeFam:
Gene Tree for RPL23P3 (if available)

No data available for Orthologs for RPL23P3 Gene

Paralogs for RPL23P3 Gene

No data available for Paralogs for RPL23P3 Gene

Variants for RPL23P3 Gene

Relevant External Links for RPL23P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23P3 Gene

Disorders for RPL23P3 Gene

Relevant External Links for RPL23P3

Genetic Association Database (GAD)
RPL23P3

No disorders were found for RPL23P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23P3 Gene

Publications for RPL23P3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association study meta-analysis of European and Asian-ancestry samples identifies three novel loci associated with bipolar disorder. (PMID: 22182935) Chen D.T. … Schulze T.G. (Mol. Psychiatry 2013) 46 64
  3. Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4. (PMID: 21926972) (Nat. Genet. 2011) 46 64
  4. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64
  5. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D. … Mitchell G.F. (BMC Med. Genet. 2007) 46 64

Products for RPL23P3 Gene

Sources for RPL23P3 Gene

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