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Aliases for RPL23AP82 Gene

Aliases for RPL23AP82 Gene

  • Ribosomal Protein L23a Pseudogene 82 2 3 5
  • RPL23A_43_1761 3

External Ids for RPL23AP82 Gene

Previous GeneCards Identifiers for RPL23AP82 Gene

  • GC22P049542
  • GC22P051195

Summaries for RPL23AP82 Gene

GeneCards Summary for RPL23AP82 Gene

RPL23AP82 (Ribosomal Protein L23a Pseudogene 82) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP82 Gene

Genomics for RPL23AP82 Gene

Regulatory Elements for RPL23AP82 Gene

Enhancers for RPL23AP82 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F050756 0.5 ENCODE 10.5 +0.4 368 0.9 HDAC1 PKNOX1 ZNF76 KLF17 DMAP1 ZNF2 GLIS2 ZNF366 KLF7 EGR2 RABL2B RPL23AP82 GC22P050778
GH22F050755 0.2 Ensembl 10.5 -1.8 -1848 0.2 RPL23AP82 GC22M050755 GC22P050755
GH22F050783 0.4 ENCODE 9.9 +26.8 26752 1.2 ELF3 HDAC1 ARID4B SIN3A BMI1 DMAP1 ZNF48 ZSCAN9 ELK1 MIXL1 RABL2B RPL23AP82 PIR40958
GH22F050467 0.6 FANTOM5 ENCODE 5 -285.1 -285120 7.9 HDGF SIN3A ARID4B GLI4 ZNF48 YY1 GLIS2 ZNF143 KLF7 ZNF263 TUBGCP6 CPT1B DENND6B MIOX RPL23AP82 PLXNB2 RABL2B CHKB HDAC10 SBF1
GH22F050760 0.8 Ensembl 0.8 +3.3 3253 0.4 CHD7 ZEB2 ZNF264 JUND ZBTB48 ZNF524 PRDM10 FOS TRIM24 MAFK ALG12 RABL2B ENSG00000273192 ENSG00000272836 LOC105373095 ZBED4 RPL23AP82 GC22P050778
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL23AP82 on UCSC Golden Path with GeneCards custom track

Promoters for RPL23AP82 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001844564 352 1400 HDAC1 PKNOX1 ZNF76 KLF17 ZNF2 GLIS2 ZNF366 KLF7 EGR2 CEBPB

Genomic Location for RPL23AP82 Gene

Chromosome:
22
Start:
50,756,948 bp from pter
End:
50,801,309 bp from pter
Size:
44,362 bases
Orientation:
Plus strand

Genomic View for RPL23AP82 Gene

Genes around RPL23AP82 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP82 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP82 Gene

Proteins for RPL23AP82 Gene

Post-translational modifications for RPL23AP82 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP82 Gene

Domains & Families for RPL23AP82 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP82 Gene

Function for RPL23AP82 Gene

Phenotypes for RPL23AP82 Gene

genes like me logo Genes that share phenotypes with RPL23AP82: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP82 Gene

Localization for RPL23AP82 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP82 Gene

Pathways & Interactions for RPL23AP82 Gene

SuperPathways for RPL23AP82 Gene

No Data Available

Interacting Proteins for RPL23AP82 Gene

Gene Ontology (GO) - Biological Process for RPL23AP82 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP82 Gene

Transcripts for RPL23AP82 Gene

Unigene Clusters for RPL23AP82 Gene

Ribosomal protein L23a pseudogene 82:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP82 Gene

No ASD Table

Relevant External Links for RPL23AP82 Gene

GeneLoc Exon Structure for
RPL23AP82
ECgene alternative splicing isoforms for
RPL23AP82

Expression for RPL23AP82 Gene

mRNA expression in normal human tissues for RPL23AP82 Gene

mRNA expression in normal human tissues for RPL23AP82 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP82 Gene:

RPL23AP82

SOURCE GeneReport for Unigene cluster for RPL23AP82 Gene:

Hs.406135
genes like me logo Genes that share expression patterns with RPL23AP82: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL23AP82 Gene

Orthologs for RPL23AP82 Gene

Evolution for RPL23AP82 Gene

ENSEMBL:
Gene Tree for RPL23AP82 (if available)
TreeFam:
Gene Tree for RPL23AP82 (if available)

No data available for Orthologs for RPL23AP82 Gene

Paralogs for RPL23AP82 Gene

No data available for Paralogs for RPL23AP82 Gene

Variants for RPL23AP82 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP82 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1054698 -- 50,769,673(+) AGGAC(A/C/G/T)TGTTT intron-variant, nc-transcript-variant
rs11091014 -- 50,795,238(+) ttcca(C/T)ttagc intron-variant
rs111231340 -- 50,779,722(+) CTCAC(A/G)CCTGT intron-variant
rs111254433 -- 50,767,582(+) AACAA(A/T)GCCCG intron-variant, nc-transcript-variant, utr-variant-3-prime
rs111272613 -- 50,762,988(+) TGATC(C/T)GCCCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP82 Gene

Variant ID Type Subtype PubMed ID
dgv1344e212 CNV gain 25503493
dgv1345e212 CNV loss 25503493
esv25306 CNV loss 19812545
esv3648096 CNV loss 21293372
nsv1110405 CNV duplication 24896259
nsv1147704 CNV duplication 26484159
nsv1160783 CNV duplication 26073780
nsv428394 CNV loss 18775914
nsv966116 CNV duplication 23825009
nsv966117 CNV duplication 23825009
nsv966166 CNV duplication 23825009
nsv979727 CNV duplication 23825009
nsv979728 CNV duplication 23825009

Relevant External Links for RPL23AP82 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP82

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP82 Gene

Disorders for RPL23AP82 Gene

Relevant External Links for RPL23AP82

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL23AP82

No disorders were found for RPL23AP82 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP82 Gene

Publications for RPL23AP82 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPL23AP82 Gene

Sources for RPL23AP82 Gene

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