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Aliases for RPL23AP82 Gene

Aliases for RPL23AP82 Gene

  • Ribosomal Protein L23a Pseudogene 82 2 3 5
  • RPL23A_43_1761 3

External Ids for RPL23AP82 Gene

Previous GeneCards Identifiers for RPL23AP82 Gene

  • GC22P049542
  • GC22P051195

Summaries for RPL23AP82 Gene

GeneCards Summary for RPL23AP82 Gene

RPL23AP82 (Ribosomal Protein L23a Pseudogene 82) is a Pseudogene.

Additional gene information for RPL23AP82 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP82 Gene

Genomics for RPL23AP82 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP82 Gene

Promoters and enhancers for RPL23AP82 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I050756 Promoter/Enhancer 1.4 Ensembl ENCODE 560.6 +0.4 352 1 PKNOX1 ATF1 SIN3A DMAP1 ZNF2 GLIS2 ZNF143 KLF7 ATF7 NCOA1 RPL23AP82 GC22M050755 LOC150417 RABL2B GC22P050754 GC22P050755 GC22P050778
GH22I050757 Enhancer 0.2 Ensembl 550.8 -0.4 -447 0.2 GC22M050755 LOC150417 RPL23AP82 GC22P050754 GC22P050755
GH22I050783 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 9.9 +26.8 26753 1.4 ATF1 ARID4B SIN3A DMAP1 ZNF48 NCOA2 ELK1 ZNF207 SP3 SP5 RABL2B KLHDC7B RPL23AP82 PIR40958
GH22I050467 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5 -285.1 -285119 7.9 HDGF ARID4B SIN3A GLI4 IRF4 ZNF48 YY1 GLIS2 ZNF143 KLF7 SBF1 TUBGCP6 CPT1B DENND6B MIOX RPL23AP82 PLXNB2 RABL2B CHKB HDAC10
GH22I050719 Enhancer 0.5 dbSUPER 8.6 -34.4 -34413 6.6 CTCF ZNF10 PRDM10 SPI1 EZH2 SYCE3 RPL23AP82 RABL2B LOC105373100 RNU6-409P GC22M050692 SHANK3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23AP82 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL23AP82 gene promoter:

Genomic Locations for RPL23AP82 Gene

Genomic Locations for RPL23AP82 Gene
chr22:50,756,948-50,801,309
(GRCh38/hg38)
Size:
44,362 bases
Orientation:
Plus strand
chr22:51,195,376-51,239,737
(GRCh37/hg19)

Genomic View for RPL23AP82 Gene

Genes around RPL23AP82 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP82 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP82 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP82 Gene

Proteins for RPL23AP82 Gene

Post-translational modifications for RPL23AP82 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP82 Gene

Domains & Families for RPL23AP82 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP82 Gene

Function for RPL23AP82 Gene

Phenotypes for RPL23AP82 Gene

genes like me logo Genes that share phenotypes with RPL23AP82: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP82 Gene

Localization for RPL23AP82 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP82 Gene

Pathways & Interactions for RPL23AP82 Gene

SuperPathways for RPL23AP82 Gene

No Data Available

Interacting Proteins for RPL23AP82 Gene

Gene Ontology (GO) - Biological Process for RPL23AP82 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP82 Gene

Drugs & Compounds for RPL23AP82 Gene

No Compound Related Data Available

Transcripts for RPL23AP82 Gene

Unigene Clusters for RPL23AP82 Gene

Ribosomal protein L23a pseudogene 82:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP82 Gene

No ASD Table

Relevant External Links for RPL23AP82 Gene

GeneLoc Exon Structure for
RPL23AP82
ECgene alternative splicing isoforms for
RPL23AP82

Expression for RPL23AP82 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP82 Gene

mRNA expression in normal human tissues for RPL23AP82 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP82 Gene:

RPL23AP82

SOURCE GeneReport for Unigene cluster for RPL23AP82 Gene:

Hs.406135
genes like me logo Genes that share expression patterns with RPL23AP82: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP82 Gene

Orthologs for RPL23AP82 Gene

Evolution for RPL23AP82 Gene

ENSEMBL:
Gene Tree for RPL23AP82 (if available)
TreeFam:
Gene Tree for RPL23AP82 (if available)

No data available for Orthologs for RPL23AP82 Gene

Paralogs for RPL23AP82 Gene

No data available for Paralogs for RPL23AP82 Gene

Variants for RPL23AP82 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP82 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000463957 -- 50,758,086(+) T/A genic_upstream_transcript_variant, intron_variant
rs1000498214 -- 50,756,837(+) A/C upstream_transcript_variant
rs1000567259 -- 50,757,704(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000599197 -- 50,763,042(+) G/T genic_upstream_transcript_variant, intron_variant
rs1001204386 -- 50,756,883(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP82 Gene

Variant ID Type Subtype PubMed ID
dgv1344e212 CNV gain 25503493
dgv1345e212 CNV loss 25503493
esv25306 CNV loss 19812545
esv3648096 CNV loss 21293372
nsv1110405 CNV duplication 24896259
nsv1147704 CNV duplication 26484159
nsv1160783 CNV duplication 26073780
nsv428394 CNV loss 18775914
nsv966116 CNV duplication 23825009
nsv966117 CNV duplication 23825009
nsv966166 CNV duplication 23825009
nsv979727 CNV duplication 23825009
nsv979728 CNV duplication 23825009

Additional Variant Information for RPL23AP82 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP82

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP82 Gene

Disorders for RPL23AP82 Gene

Additional Disease Information for RPL23AP82

No disorders were found for RPL23AP82 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP82 Gene

Publications for RPL23AP82 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPL23AP82 Gene

Sources for RPL23AP82 Gene

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