RPL23AP7 Gene
pseudogene GIFtS: 26
GCID: GC02M114370
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ribosomal protein L23a pseudogene 7
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Aliases
for RPL23AP7 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
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| Ribosomal Protein L23a Pseudogene 71 2 | | RPL23AL11 2 | | BA395L14.91 | | RPL23A_6_2672 |
| External Ids: | HGNC: 173361 | Entrez Gene: 1184332 | Ensembl: ENSG000002403567 | | ORGUL members: | |
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| NONCODE:n387141 n383723 n387140 | |
Export aliases for RPL23AP7 gene to outside databasesPrevious GC identifers: GC02U990310 GC02M112289 GC02M114275 GC02M114464 GC02M114085 GC07M000122
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Summaries
for RPL23AP7 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
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Genomic Views
for RPL23AP7 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000002.11 NC_018913.1 NT_022135.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the RPL23AP7 gene promoter:
GR HOXA3 AML1a GR-beta NF-kappaB FOXJ2 (long isoform) GR-alpha FOXJ2 Zic3 NF-kappaB1
Other transcription factors
Search SABiosciences Chromatin IP Primers for RPL23AP7
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RPL23AP7 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 2q14 Ensembl cytogenetic band: 2q13 HGNC cytogenetic band: 2q14RPL23AP7 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M114370: view genomic region
(about GC identifiers)
Start:
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114,368,079 bp from pter |
End:
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114,384,715 bp from pter |
Size:
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16,637 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 122,356-122,791 |
ORGUL member locations:
Legend (see complete legend)
114368815 114376765 114384715 chr2
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Proteins
for RPL23AP7 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB: --
|
Protein
Domains /
Families
for RPL23AP7 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| -- |
Function
for RPL23AP7 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RPL23AP7
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RPL23AP7
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for RPL23AP7 | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RPL23AP7 | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RPL23AP7 |
|
Pathways & Interactions
for RPL23AP7 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for RPL23AP7
|
Drugs & Compounds
for RPL23AP7 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for RPL23AP7
Search CenterWatch for drugs/clinical trials and news about RPL23AP7
|
Transcripts
for RPL23AP7 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
Unigene Clusters for RPL23AP7: Ribosomal protein L23a pseudogene 7 Hs.595056 [show with all ESTs], Hs.720253 [show with all ESTs]Unigene Representative Sequences: NR_024528, AK0552643 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000416673(uc010yxy.1 uc002tkk.2 uc010yxz.1 uc010yya.2)
ENST00000391616(uc010yyb.2) ENST00000449021
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RPL23AP7
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RPL23AP7
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for RPL23AP7 | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for RPL23AP7 | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RPL23AP7 |
Additional cDNA sequence: AK055264.1 24 DOTS entries: DT.120990772 DT.120990824 DT.95267259 DT.99984608 DT.120643081 DT.442163 DT.87014721 DT.91779511 DT.92414392 DT.97834207 DT.120990776 DT.91745715 DT.97858298 DT.100044822 DT.120990770 DT.95239254 DT.100044823 DT.100819036 DT.102840983 DT.120860828 DT.120958540 DT.121131837 DT.121473627 DT.95264362 24/100 AceView cDNA sequences (see all 100): CB159401 AW959980 AA025372 BQ776511 CA306343 BQ776826 AA919161 F02781 AA365219 BM803758 BG335018 BM689726 BM554935 AA862479 BQ018462 BQ718297 H12200 BG438235 BM911701 BE746978 CA443501 AA026523 BE300890 BI837112
GeneLoc Exon Structure
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Expression
for RPL23AP7 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| RPL23AP7 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTAACTTAAG
About this image
Genevestigator expression for RPL23AP7
SOURCE GeneReport for Unigene clusters: Hs.595056 Hs.720253
SABiosciences Custom PCR Arrays for RPL23AP7
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RPL23AP7
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat RPL23AP7 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RPL23AP7 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RPL23AP7 |
Orthologs
for RPL23AP7 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for RPL23AP7 (if available)
TreeFam Gene Tree for RPL23AP7 (if available) |
Paralogs
for RPL23AP7 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for RPL23AP7 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 2 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for RPL23AP7 (114368079 - 114384715 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for RPL23AP7
1 CNV: 3386 | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for RPL23AP7 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for RPL23AP7 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for RPL23AP7 gene integrated from 9 sources:
(articles sorted by number of sources associating them with RPL23AP7) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Comparative analysis of processed ribosomal protein p seudogenes in four mammalian genomes. (PubMed id 19123937)1, 3 Balasubramanian S....Gerstein M. (2009)
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (1996)
- Nucleotide sequence of a cDNA clone (SUBT1) partly homologous to a human subtelomeric repeat sequence. (PubMed id 8799457)1 Lagercrantz J. and Lagercrantz S. (1996)
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External Searches for RPL23AP7 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing RPL23AP7 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing RPL23AP7 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing RPL23AP7 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for RPL23AP7 | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
| Patent Information for RPL23AP7 gene:
Search GeneIP for patents involving RPL23AP7
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for RPL23AP7 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for RPL23AP7 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for RPL23AP7 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for RPL23AP7 | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for RPL23AP7 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for RPL23AP7 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for RPL23AP7 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat RPL23AP7 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing RPL23AP7 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat RPL23AP7 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat RPL23AP7 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat RPL23AP7 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat RPL23AP7 |
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 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for RPL23AP7 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat RPL23AP7 |
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