Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL23AP7 Gene

Aliases for RPL23AP7 Gene

  • Ribosomal Protein L23a Pseudogene 7 2 3 5
  • Ribosomal Protein L23a-Like 1 3
  • RPL23A_6_267 3
  • BA395L14.9 3
  • RPL23AL1 3

External Ids for RPL23AP7 Gene

Previous GeneCards Identifiers for RPL23AP7 Gene

  • GC02U990310
  • GC02M112289
  • GC02M114275
  • GC02M114464
  • GC02M114085
  • GC02M114370
  • GC07M000122

Summaries for RPL23AP7 Gene

GeneCards Summary for RPL23AP7 Gene

RPL23AP7 (Ribosomal Protein L23a Pseudogene 7) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP7 Gene

Genomics for RPL23AP7 Gene

Regulatory Elements for RPL23AP7 Gene

Enhancers for RPL23AP7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G113602 1.1 ENCODE 21.5 +23.2 23165 2.0 HDGF PKNOX1 FOXA2 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 DDX11L2 RPL23AP7 RABL2A ENSG00000227359 PAX8-AS1 PSD4 FOXD4L1 ENSG00000279267
GH02G113754 1.1 ENCODE 20.2 -129.2 -129237 3.0 HDGF HNRNPUL1 FOXA2 CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ENSG00000227359 DDX11L2 RPL23AP7 ENSG00000228857 SLC35F5 MIR4782
GH02G113623 0.5 Ensembl 37 +3.4 3438 0.6 ZNF316 MAFG EMSY RPL23AP7 ENSG00000279267
GH02G113784 0.7 ENCODE 19.4 -158.4 -158443 1.3 GATAD2A CTCF NFIA HMG20A MIER2 ZNF644 RAD21 YY1 NR2F2 SMC3 RPL23AP7 SLC35F5 GC02M113811
GH02G113885 1.8 FANTOM5 ENCODE dbSUPER 5.9 -263.7 -263701 9.8 MLX CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ACTR3 SLC35F5 ENSG00000227359 ENSG00000244063 LINC01191 RPL23AP7 DDX11L2 WASH2P CBWD2 LOC101060091
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP7 on UCSC Golden Path with GeneCards custom track

Promoters for RPL23AP7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000122119 -162 1401 ELF3 HDAC1 PKNOX1 RB1 ARID4B SIN3A DMAP1 BMI1 ELK1 ZNF143

Genomic Location for RPL23AP7 Gene

Chromosome:
2
Start:
113,610,502 bp from pter
End:
113,627,138 bp from pter
Size:
16,637 bases
Orientation:
Minus strand

Genomic View for RPL23AP7 Gene

Genes around RPL23AP7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP7 Gene

Proteins for RPL23AP7 Gene

Post-translational modifications for RPL23AP7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP7 Gene

Domains & Families for RPL23AP7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP7 Gene

Function for RPL23AP7 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP7 Gene

Localization for RPL23AP7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP7 Gene

Pathways & Interactions for RPL23AP7 Gene

SuperPathways for RPL23AP7 Gene

No Data Available

Interacting Proteins for RPL23AP7 Gene

Gene Ontology (GO) - Biological Process for RPL23AP7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP7 Gene

Transcripts for RPL23AP7 Gene

mRNA/cDNA for RPL23AP7 Gene

Unigene Clusters for RPL23AP7 Gene

Ribosomal protein L23a pseudogene 7:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP7 Gene

No ASD Table

Relevant External Links for RPL23AP7 Gene

GeneLoc Exon Structure for
RPL23AP7
ECgene alternative splicing isoforms for
RPL23AP7

Expression for RPL23AP7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP7 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP7 Gene:

RPL23AP7

SOURCE GeneReport for Unigene cluster for RPL23AP7 Gene:

Hs.595056
genes like me logo Genes that share expression patterns with RPL23AP7: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP7 Gene

Orthologs for RPL23AP7 Gene

Evolution for RPL23AP7 Gene

ENSEMBL:
Gene Tree for RPL23AP7 (if available)
TreeFam:
Gene Tree for RPL23AP7 (if available)

No data available for Orthologs for RPL23AP7 Gene

Paralogs for RPL23AP7 Gene

No data available for Paralogs for RPL23AP7 Gene

Variants for RPL23AP7 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP7 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1001071233 -- 113,612,986(+) TACTT(A/T)AAATG intron-variant
rs1001084513 -- 113,611,416(+) ACTTG(C/G)CTTGG nc-transcript-variant
rs1001236335 -- 113,624,466(+) TAATA(C/G)TGTAA intron-variant
rs1001300608 -- 113,626,696(+) AGACC(A/G)TCTCA intron-variant, upstream-variant-2KB
rs1001684129 -- 113,623,456(+) CTGCT(C/G)CTCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP7 Gene

Variant ID Type Subtype PubMed ID
dgv1164e212 CNV loss 25503493
dgv1165e212 CNV loss 25503493
esv2759085 CNV gain+loss 17122850
esv3584028 CNV loss 25503493
esv3592016 CNV gain 21293372
nsv1001195 CNV gain 25217958
nsv1132505 CNV duplication 24896259
nsv1139730 CNV duplication 24896259
nsv1151721 CNV duplication 26484159
nsv508163 CNV deletion 20534489
nsv582714 CNV gain 21841781
nsv821507 CNV duplication 20802225
nsv961495 CNV duplication 23825009
nsv961642 CNV duplication 23825009
nsv963711 CNV duplication 23825009

Relevant External Links for RPL23AP7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP7 Gene

Disorders for RPL23AP7 Gene

Relevant External Links for RPL23AP7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL23AP7

No disorders were found for RPL23AP7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP7 Gene

Publications for RPL23AP7 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for RPL23AP7 Gene

Sources for RPL23AP7 Gene

Content
Loading form....