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Aliases for RPL23AP64 Gene

Subcategory (RNA class) for RPL23AP64 Gene

antisense

Aliases for RPL23AP64 Gene

  • Ribosomal Protein L23a Pseudogene 64 2 3 5
  • RPL23A_25_1182 3

External Ids for RPL23AP64 Gene

ORGUL Members for RPL23AP64 Gene

Previous GeneCards Identifiers for RPL23AP64 Gene

  • GC11M118379
  • GC11M118873
  • GC11M114813

Summaries for RPL23AP64 Gene

GeneCards Summary for RPL23AP64 Gene

RPL23AP64 (Ribosomal Protein L23a Pseudogene 64) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP64 Gene

Genomics for RPL23AP64 Gene

Regulatory Elements for RPL23AP64 Gene

Enhancers for RPL23AP64 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F119167 1.1 ENCODE 45 -165.3 -165336 2.8 PKNOX1 ARNT WRNIP1 ZFP64 ARID4B DMAP1 ZNF2 YY1 ZNF302 ZNF207 ENSG00000254909 UBE4A ARCN1 RPL23AP64 RPL5P30 ENSG00000254428 HINFP BCL9L RNF26 IFT46
GH11F119090 1.4 Ensembl ENCODE 24.3 -89.8 -89809 6.4 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 HINFP BCL9L ENSG00000254909 UBE4A RPL23AP64 IFT46 ARCN1 RNF26 ENSG00000254428 DDX6
GH11F118237 1.7 FANTOM5 Ensembl ENCODE 17 +763.2 763232 5.5 PKNOX1 ARNT SIN3A YY1 ZNF207 FOS SP5 ZHX2 JUNB REST JAML MPZL3 ENSG00000254909 ENSG00000254428 RPL23AP64 UBE4A CCDC84 CD3E HINFP IL10RA
GH11F118906 1.9 FANTOM5 Ensembl ENCODE 10.3 +84.8 84801 24.6 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC LOC101929133 RPS25 HINFP CCDC84 CXCR5 DPAGT1 UBE4A HMBS IFT46 ENSG00000222529
GH11F118398 1.1 ENCODE 17 +602.8 602795 5.1 ATF1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF48 YY1 GTF3C2 ELK1 ARCN1 RNF26 ENSG00000254909 ENSG00000254428 RPL23AP64 UBE4A BCL9L ENSG00000255384 KMT2A RPS25
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP64 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP64 Gene

Chromosome:
11
Start:
119,002,953 bp from pter
End:
119,003,593 bp from pter
Size:
641 bases
Orientation:
Minus strand

Genomic View for RPL23AP64 Gene

Genes around RPL23AP64 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP64 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP64 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP64 Gene

Proteins for RPL23AP64 Gene

Post-translational modifications for RPL23AP64 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP64 Gene

Domains & Families for RPL23AP64 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP64 Gene

Function for RPL23AP64 Gene

Phenotypes for RPL23AP64 Gene

genes like me logo Genes that share phenotypes with RPL23AP64: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP64 Gene

Localization for RPL23AP64 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP64 Gene

Pathways & Interactions for RPL23AP64 Gene

SuperPathways for RPL23AP64 Gene

No Data Available

Interacting Proteins for RPL23AP64 Gene

Gene Ontology (GO) - Biological Process for RPL23AP64 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP64 Gene

Transcripts for RPL23AP64 Gene

mRNA/cDNA for RPL23AP64 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP64 Gene

Ribosomal protein L23a pseudogene 64:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP64 Gene

No ASD Table

Relevant External Links for RPL23AP64 Gene

GeneLoc Exon Structure for
RPL23AP64
ECgene alternative splicing isoforms for
RPL23AP64

Expression for RPL23AP64 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23AP64 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP64 Gene:

RPL23AP64

SOURCE GeneReport for Unigene cluster for RPL23AP64 Gene:

Hs.647213
genes like me logo Genes that share expression patterns with RPL23AP64: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL23AP64 Gene

Orthologs for RPL23AP64 Gene

Evolution for RPL23AP64 Gene

ENSEMBL:
Gene Tree for RPL23AP64 (if available)
TreeFam:
Gene Tree for RPL23AP64 (if available)

No data available for Orthologs for RPL23AP64 Gene

Paralogs for RPL23AP64 Gene

No data available for Paralogs for RPL23AP64 Gene

Variants for RPL23AP64 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP64 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10718631 -- 119,002,682(+) GTTGG(-/T)TTTTT intron-variant, downstream-variant-500B
rs10892320 -- 119,002,675(+) ATAAG(C/T)TGTTG intron-variant, downstream-variant-500B
rs111365393 -- 119,005,180(+) AAAAA(C/T)TTTTG intron-variant, upstream-variant-2KB
rs111774914 -- 119,005,267(+) CGAGA(C/T)CATCC intron-variant, upstream-variant-2KB
rs112082310 -- 119,005,382(+) AATGG(C/T)GTGAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP64 Gene

Variant ID Type Subtype PubMed ID
nsv975231 CNV duplication 23825009
nsv1127234 CNV deletion 24896259

Relevant External Links for RPL23AP64 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP64

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP64 Gene

Disorders for RPL23AP64 Gene

Relevant External Links for RPL23AP64

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL23AP64

No disorders were found for RPL23AP64 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP64 Gene

Publications for RPL23AP64 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPL23AP64 Gene

Sources for RPL23AP64 Gene

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