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Aliases for RPL23AP64 Gene

Subcategory (RNA class) for RPL23AP64 Gene

antisense

Aliases for RPL23AP64 Gene

  • Ribosomal Protein L23a Pseudogene 64 2 3 5
  • RPL23A_25_1182 3

External Ids for RPL23AP64 Gene

ORGUL Members for RPL23AP64 Gene

Previous GeneCards Identifiers for RPL23AP64 Gene

  • GC11M118379
  • GC11M118873
  • GC11M114813

Summaries for RPL23AP64 Gene

GeneCards Summary for RPL23AP64 Gene

RPL23AP64 (Ribosomal Protein L23a Pseudogene 64) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for RPL23AP64 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP64 Gene

Genomics for RPL23AP64 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP64 Gene

Promoters and enhancers for RPL23AP64 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I119090 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 33.8 -90.1 -90079 5.9 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 H2AFX GC11M119097 KMT2A HINFP UBE4A ARCN1 BCL9L RPL5P30 ENSG00000254909 CCDC84
GH11I118906 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 25.2 +84.8 84800 24.6 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 BCL9L DPAGT1 UBE4A ENSG00000254909 RPL23AP64 ARCN1 ENSG00000254428 RNF26 CCDC84 KMT2A
GH11I118529 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 27.4 +472.7 472671 3.3 HDGF ATF1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 ETS1 GLIS2 ZNF207 TMEM25 LOC101929089 GC11P118532 ENSG00000254909 UBE4A BCL9L RPL23AP64 ARCN1 IFT46 ENSG00000254428
GH11I118238 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 16.7 +763.0 763032 5.1 FOXA2 PKNOX1 CLOCK SMAD1 ARNT NEUROD1 SIN3A IRF4 YY1 ZNF766 JAML MPZL3 ENSG00000254909 UBE4A BCL9L ARCN1 RPL23AP64 ENSG00000254428 DPAGT1 CD3E
GH11I119015 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 12.9 -14.5 -14468 4.6 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 TRAPPC4 GC11P119045 PIR32149 MIR3656 RPS25 PIR60932 BCL9L ARCN1 ENSG00000254909 UBE4A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23AP64 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL23AP64 gene promoter:

Genomic Locations for RPL23AP64 Gene

Genomic Locations for RPL23AP64 Gene
chr11:119,002,953-119,003,593
(GRCh38/hg38)
Size:
641 bases
Orientation:
Minus strand
chr11:118,873,663-118,874,303
(GRCh37/hg19)

Genomic View for RPL23AP64 Gene

Genes around RPL23AP64 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP64 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP64 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP64 Gene

Proteins for RPL23AP64 Gene

Post-translational modifications for RPL23AP64 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP64 Gene

Domains & Families for RPL23AP64 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP64 Gene

Function for RPL23AP64 Gene

Phenotypes for RPL23AP64 Gene

genes like me logo Genes that share phenotypes with RPL23AP64: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP64 Gene

Localization for RPL23AP64 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP64 Gene

Pathways & Interactions for RPL23AP64 Gene

SuperPathways for RPL23AP64 Gene

No Data Available

Interacting Proteins for RPL23AP64 Gene

Gene Ontology (GO) - Biological Process for RPL23AP64 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP64 Gene

Drugs & Compounds for RPL23AP64 Gene

No Compound Related Data Available

Transcripts for RPL23AP64 Gene

mRNA/cDNA for RPL23AP64 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP64 Gene

Ribosomal protein L23a pseudogene 64:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP64 Gene

No ASD Table

Relevant External Links for RPL23AP64 Gene

GeneLoc Exon Structure for
RPL23AP64
ECgene alternative splicing isoforms for
RPL23AP64

Expression for RPL23AP64 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP64 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP64 Gene:

RPL23AP64

SOURCE GeneReport for Unigene cluster for RPL23AP64 Gene:

Hs.647213
genes like me logo Genes that share expression patterns with RPL23AP64: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP64 Gene

Orthologs for RPL23AP64 Gene

Evolution for RPL23AP64 Gene

ENSEMBL:
Gene Tree for RPL23AP64 (if available)
TreeFam:
Gene Tree for RPL23AP64 (if available)

No data available for Orthologs for RPL23AP64 Gene

Paralogs for RPL23AP64 Gene

No data available for Paralogs for RPL23AP64 Gene

Variants for RPL23AP64 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP64 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000559872 -- 119,005,258(-) A/C upstream_transcript_variant
rs1001757740 -- 119,002,495(-) C/T downstream_transcript_variant
rs1002598893 -- 119,002,458(-) C/A downstream_transcript_variant
rs1005410042 -- 119,004,124(-) C/G upstream_transcript_variant
rs1005549967 -- 119,002,580(-) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP64 Gene

Variant ID Type Subtype PubMed ID
nsv1127234 CNV deletion 24896259
nsv975231 CNV duplication 23825009

Additional Variant Information for RPL23AP64 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP64

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP64 Gene

Disorders for RPL23AP64 Gene

Additional Disease Information for RPL23AP64

No disorders were found for RPL23AP64 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP64 Gene

Publications for RPL23AP64 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPL23AP64 Gene

Sources for RPL23AP64 Gene

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