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Aliases for RPL23AP53 Gene

Aliases for RPL23AP53 Gene

  • Ribosomal Protein L23a Pseudogene 53 2 3 5
  • RPL23A_20_869 3

External Ids for RPL23AP53 Gene

Previous GeneCards Identifiers for RPL23AP53 Gene

  • GC08M000151
  • GC08M000002
  • GC08M000158

Summaries for RPL23AP53 Gene

GeneCards Summary for RPL23AP53 Gene

RPL23AP53 (Ribosomal Protein L23a Pseudogene 53) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP53 Gene

Genomics for RPL23AP53 Gene

Regulatory Elements for RPL23AP53 Gene

Promoters for RPL23AP53 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RPL23AP53 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP53 Gene

Chromosome:
8
Start:
208,344 bp from pter
End:
232,318 bp from pter
Size:
23,975 bases
Orientation:
Minus strand

Genomic View for RPL23AP53 Gene

Genes around RPL23AP53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP53 Gene

Proteins for RPL23AP53 Gene

Post-translational modifications for RPL23AP53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP53 Gene

Domains & Families for RPL23AP53 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP53 Gene

Function for RPL23AP53 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP53 Gene

Localization for RPL23AP53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP53 Gene

Pathways & Interactions for RPL23AP53 Gene

SuperPathways for RPL23AP53 Gene

No Data Available

Interacting Proteins for RPL23AP53 Gene

Gene Ontology (GO) - Biological Process for RPL23AP53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP53 Gene

Drugs & Compounds for RPL23AP53 Gene

No Compound Related Data Available

Transcripts for RPL23AP53 Gene

mRNA/cDNA for RPL23AP53 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP53 Gene

Ribosomal protein L23a pseudogene 53:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP53 Gene

No ASD Table

Relevant External Links for RPL23AP53 Gene

GeneLoc Exon Structure for
RPL23AP53
ECgene alternative splicing isoforms for
RPL23AP53

Expression for RPL23AP53 Gene

mRNA expression in normal human tissues for RPL23AP53 Gene

SOURCE GeneReport for Unigene cluster for RPL23AP53 Gene Hs.652159

genes like me logo Genes that share expression patterns with RPL23AP53: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for RPL23AP53 Gene

Orthologs for RPL23AP53 Gene

Evolution for RPL23AP53 Gene

ENSEMBL:
Gene Tree for RPL23AP53 (if available)
TreeFam:
Gene Tree for RPL23AP53 (if available)

No data available for Orthologs for RPL23AP53 Gene

Paralogs for RPL23AP53 Gene

No data available for Paralogs for RPL23AP53 Gene

Variants for RPL23AP53 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP53 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs13291 -- 208,462(+) AAATA(C/T)ATAAA nc-transcript-variant
rs1134190 -- 208,533(-) tgagg(C/T)gtctg nc-transcript-variant
rs1055913 -- 209,375(-) tggaa(A/G)taaca nc-transcript-variant
rs1808223 -- 227,932(+) GAAAT(C/G)CGAAG intron-variant
rs2003496 -- 226,814(-) GCCCT(C/G)TGTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP53 Gene

Variant ID Type Subtype PubMed ID
nsv471521 CNV Duplication 19718026
esv26079 CNV Gain+Loss 19812545
nsv831205 CNV Loss 17160897
nsv428193 CNV Gain+Loss 18775914
dgv2168e1 CNV Complex 17122850
dgv2169e1 CNV Complex 17122850
nsv889662 CNV Loss 21882294
nsv889663 CNV Gain 21882294
nsv6034 CNV Insertion 18451855
nsv520036 CNV Gain 19592680
nsv527387 CNV Gain 19592680
nsv465263 CNV Gain 19166990
nsv524542 CNV Gain 19592680
nsv470163 CNV Loss 18288195
nsv465264 CNV Loss 19166990
nsv831206 CNV Loss 17160897
nsv889664 CNV Gain 21882294
dgv7582n71 CNV Gain 21882294
nsv8254 CNV Gain 18304495

Relevant External Links for RPL23AP53 Gene

HapMap Linkage Disequilibrium report
RPL23AP53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP53 Gene

Disorders for RPL23AP53 Gene

Relevant External Links for RPL23AP53

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL23AP53

No disorders were found for RPL23AP53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP53 Gene

Publications for RPL23AP53 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for RPL23AP53 Gene

Sources for RPL23AP53 Gene

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