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Aliases for RPL23AP53 Gene

Aliases for RPL23AP53 Gene

  • Ribosomal Protein L23a Pseudogene 53 2 3 5
  • RPL23A_20_869 3

External Ids for RPL23AP53 Gene

Previous GeneCards Identifiers for RPL23AP53 Gene

  • GC08M000151
  • GC08M000002
  • GC08M000158

Summaries for RPL23AP53 Gene

GeneCards Summary for RPL23AP53 Gene

RPL23AP53 (Ribosomal Protein L23a Pseudogene 53) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP53 Gene

Genomics for RPL23AP53 Gene

Regulatory Elements for RPL23AP53 Gene

Enhancers for RPL23AP53 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G000627 1.7 Ensembl ENCODE dbSUPER 32.2 -397.5 -397482 4.6 MLX CREB3L1 FEZF1 ZNF416 ZNF548 SP3 MEF2D SSRP1 GLIS1 NBN ENSG00000273402 ENSG00000272240 ENSG00000272812 ZNF596 RPL23AP53 ERICH1 ENSG00000254207 ENSG00000272293 TDRP PIR62739
GH08G000680 1.4 Ensembl ENCODE 32.2 -449.0 -448952 1.4 FOXA2 PKNOX1 CREB3L1 MLX ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF302 ENSG00000273402 ENSG00000272240 ENSG00000272812 ZNF596 ERICH1 RPL23AP53 ENSG00000254207 ENSG00000272293 TDRP PIR53847
GH08G000214 0.4 Ensembl 19.8 +17.6 17618 0.6 ZSCAN4 RPL23AP53 PIR34527 PIR40691
GH08G000381 0.4 ENCODE 5 -150.4 -150357 2.2 ETV1 ZNF48 LOC105377773 RPL23AP53 FBXO25 FAM87A
GH08G000231 1 ENCODE 0.7 -0.4 -362 1.8 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ELK1 CBX5 ENSG00000272240 ZNF596 RPL23AP53 ENSG00000272812
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP53 on UCSC Golden Path with GeneCards custom track

Promoters for RPL23AP53 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000220370 18 2601 PKNOX1 ATF1 FOXA2 CREB3L1 ARID4B SIN3A ZNF48 CBX5 ZNF143 ZNF207

Genomic Location for RPL23AP53 Gene

Chromosome:
8
Start:
208,344 bp from pter
End:
232,318 bp from pter
Size:
23,975 bases
Orientation:
Minus strand

Genomic View for RPL23AP53 Gene

Genes around RPL23AP53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP53 Gene

Proteins for RPL23AP53 Gene

Post-translational modifications for RPL23AP53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP53 Gene

Domains & Families for RPL23AP53 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP53 Gene

Function for RPL23AP53 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP53 Gene

Localization for RPL23AP53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP53 Gene

Pathways & Interactions for RPL23AP53 Gene

SuperPathways for RPL23AP53 Gene

No Data Available

Interacting Proteins for RPL23AP53 Gene

Gene Ontology (GO) - Biological Process for RPL23AP53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP53 Gene

Drugs & Compounds for RPL23AP53 Gene

No Compound Related Data Available

Transcripts for RPL23AP53 Gene

mRNA/cDNA for RPL23AP53 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP53 Gene

Ribosomal protein L23a pseudogene 53:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP53 Gene

No ASD Table

Relevant External Links for RPL23AP53 Gene

GeneLoc Exon Structure for
RPL23AP53
ECgene alternative splicing isoforms for
RPL23AP53

Expression for RPL23AP53 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP53 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP53 Gene:

RPL23AP53

SOURCE GeneReport for Unigene cluster for RPL23AP53 Gene:

Hs.652159
genes like me logo Genes that share expression patterns with RPL23AP53: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP53 Gene

Orthologs for RPL23AP53 Gene

Evolution for RPL23AP53 Gene

ENSEMBL:
Gene Tree for RPL23AP53 (if available)
TreeFam:
Gene Tree for RPL23AP53 (if available)

No data available for Orthologs for RPL23AP53 Gene

Paralogs for RPL23AP53 Gene

No data available for Paralogs for RPL23AP53 Gene

Variants for RPL23AP53 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP53 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000045458 -- 217,458(+) CTTGT(-/TTAA)TTATT intron-variant
rs1000089151 -- 225,495(+) ACTAG(A/C)AAGGC intron-variant
rs1000118171 -- 229,141(+) CCGGG(C/G)GTTAT intron-variant
rs1000141985 -- 209,959(+) AGAGG(C/T)TCTGG nc-transcript-variant, upstream-variant-2KB
rs1000164357 -- 212,426(+) CGACA(C/T)GTACG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP53 Gene

Variant ID Type Subtype PubMed ID
dgv1350e214 CNV gain 21293372
dgv6788n100 CNV gain 25217958
dgv6789n100 CNV gain 25217958
dgv6790n100 CNV gain 25217958
dgv6791n100 CNV gain 25217958
esv26079 CNV gain+loss 19812545
esv2759581 CNV gain+loss 17122850
esv2761228 CNV gain+loss 21179565
nsv1023686 CNV gain 25217958
nsv1030422 CNV gain 25217958
nsv1030576 CNV gain 25217958
nsv1031378 CNV loss 25217958
nsv428193 CNV gain+loss 18775914
nsv465263 CNV gain 19166990
nsv465264 CNV loss 19166990
nsv470163 CNV loss 18288195
nsv471521 CNV gain 19718026
nsv520036 CNV gain 19592680
nsv524542 CNV gain 19592680
nsv527387 CNV gain 19592680
nsv6034 CNV insertion 18451855
nsv609448 CNV loss 21841781
nsv609449 CNV gain 21841781
nsv609450 CNV gain 21841781
nsv609451 CNV loss 21841781
nsv8254 CNV gain 18304495
nsv831205 CNV loss 17160897
nsv831206 CNV loss 17160897
nsv971613 CNV duplication 23825009
nsv981990 CNV duplication 23825009

Relevant External Links for RPL23AP53 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP53 Gene

Disorders for RPL23AP53 Gene

Relevant External Links for RPL23AP53

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL23AP53

No disorders were found for RPL23AP53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP53 Gene

Publications for RPL23AP53 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPL23AP53 Gene

Sources for RPL23AP53 Gene

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