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Aliases for RPL23AP53 Gene

Aliases for RPL23AP53 Gene

  • Ribosomal Protein L23a Pseudogene 53 2 3
  • RPL23A_20_869 3

External Ids for RPL23AP53 Gene

Previous GeneCards Identifiers for RPL23AP53 Gene

  • GC08M000151
  • GC08M000002
  • GC08M000158

Summaries for RPL23AP53 Gene

GeneCards Summary for RPL23AP53 Gene

RPL23AP53 (Ribosomal Protein L23a Pseudogene 53) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP53 Gene

Genomics for RPL23AP53 Gene

Genomic Location for RPL23AP53 Gene

Start:
208,344 bp from pter
End:
232,318 bp from pter
Size:
23,975 bases
Orientation:
Minus strand

Genomic View for RPL23AP53 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL23AP53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP53 Gene

No data available for Regulatory Elements for RPL23AP53 Gene

Proteins for RPL23AP53 Gene

Post-translational modifications for RPL23AP53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP53 Gene

Domains for RPL23AP53 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP53 Gene

Function for RPL23AP53 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPL23AP53 Gene

Localization for RPL23AP53 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL23AP53 Gene COMPARTMENTS Subcellular localization image for RPL23AP53 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for RPL23AP53 Gene

Pathways for RPL23AP53 Gene

SuperPathways for RPL23AP53 Gene

No Data Available

Interacting Proteins for RPL23AP53 Gene

Gene Ontology (GO) - Biological Process for RPL23AP53 Gene

None

No data available for Pathways by source for RPL23AP53 Gene

Transcripts for RPL23AP53 Gene

mRNA/cDNA for RPL23AP53 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP53 Gene

Ribosomal protein L23a pseudogene 53:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL23AP53
    • Block miRNA regulation of RPL23AP53 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for RPL23AP53

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RPL23AP53
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP53 Gene

    No ASD Table

    Relevant External Links for RPL23AP53 Gene

    GeneLoc Exon Structure for
    RPL23AP53
    ECgene alternative splicing isoforms for
    RPL23AP53

    Expression for RPL23AP53 Gene

    mRNA expression in normal human tissues for RPL23AP53 Gene

    SOURCE GeneReport for Unigene cluster for RPL23AP53 Gene Hs.652159

    genes like me logo Genes that share expressions with RPL23AP53: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for RPL23AP53 Gene

    Orthologs for RPL23AP53 Gene

    Evolution for RPL23AP53 Gene

    ENSEMBL:
    Gene Tree for RPL23AP53 (if available)
    TreeFam:
    Gene Tree for RPL23AP53 (if available)

    No data available for Orthologs for RPL23AP53 Gene

    Paralogs for RPL23AP53 Gene

    No data available for Paralogs for RPL23AP53 Gene

    Variants for RPL23AP53 Gene

    Sequence variations from dbSNP and Humsavar for RPL23AP53 Gene

    SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
    rs1808223 -- 227,932(+) GAAAT(C/G)CGAAG intron-variant
    rs2003496 -- 226,814(-) GCCCT(C/G)TGTTA intron-variant
    rs2003497 -- 226,818(-) TGTAG(C/T)CCTGT intron-variant
    rs2074717 -- 219,227(+) TGAAA(A/G)TAAAG intron-variant
    rs2240378 -- 219,366(+) GGACA(C/T)GCCAC nc-transcript-variant

    Structural Variations from Database of Genomic Variants (DGV) for RPL23AP53 Gene

    Variant ID Type Subtype PubMed ID
    nsv471521 CNV Duplication 19718026
    esv26079 CNV Gain+Loss 19812545
    nsv831205 CNV Loss 17160897
    nsv428193 CNV Gain+Loss 18775914
    dgv2168e1 CNV Complex 17122850
    dgv2169e1 CNV Complex 17122850
    nsv889662 CNV Loss 21882294
    nsv889663 CNV Gain 21882294
    nsv6034 CNV Insertion 18451855
    nsv520036 CNV Gain 19592680
    nsv527387 CNV Gain 19592680
    nsv465263 CNV Gain 19166990
    nsv524542 CNV Gain 19592680
    nsv470163 CNV Loss 18288195
    nsv465264 CNV Loss 19166990
    nsv831206 CNV Loss 17160897
    nsv889664 CNV Gain 21882294
    dgv7582n71 CNV Gain 21882294
    nsv8254 CNV Gain 18304495

    Relevant External Links for RPL23AP53 Gene

    HapMap Linkage Disequilibrium report
    RPL23AP53

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL23AP53 Gene

    Disorders for RPL23AP53 Gene

    No disorders were found for RPL23AP53 Gene.

    No data available for UniProtKB/Swiss-Prot for RPL23AP53 Gene

    Publications for RPL23AP53 Gene

    1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

    Products for RPL23AP53 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL23AP53
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for RPL23AP53
      • Block miRNA regulation of RPL23AP53 using miScript Target Protectors

      Sources for RPL23AP53 Gene

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