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Aliases for RPL23AP53 Gene

Aliases for RPL23AP53 Gene

  • Ribosomal Protein L23a Pseudogene 53 2 3 5
  • RPL23A_20_869 3

External Ids for RPL23AP53 Gene

Previous GeneCards Identifiers for RPL23AP53 Gene

  • GC08M000151
  • GC08M000002
  • GC08M000158

Summaries for RPL23AP53 Gene

GeneCards Summary for RPL23AP53 Gene

RPL23AP53 (Ribosomal Protein L23a Pseudogene 53) is a Pseudogene.

Additional gene information for RPL23AP53 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP53 Gene

Genomics for RPL23AP53 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP53 Gene

Promoters and enhancers for RPL23AP53 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I000231 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 559.9 +0.0 17 2.6 PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF48 POLR2B GLIS2 E2F8 ELK1 ZNF596 RPL23AP53 ENSG00000272812 ENSG00000272240
GH08I000627 Enhancer 1.5 Ensembl ENCODE dbSUPER 43.7 -397.5 -397481 4.6 CLOCK MLX FEZF1 ZNF416 ZNF548 SP3 MEF2D SSRP1 GLIS1 NBN ENSG00000273402 ENSG00000272240 ENSG00000272812 ZNF596 ENSG00000272293 RPL23AP53 ERICH1 TDRP LOC105377773 ENSG00000254207
GH08I000406 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 6.4 -174.9 -174867 1.6 ATF1 ARID4B SIN3A GLI4 ZNF48 ZNF121 GLIS2 ZNF213 ELK1 ZNF143 FBXO25 RPL23AP53 GC08P000416
GH08I000214 Enhancer 0.3 Ensembl 19.8 +17.6 17617 0.6 ZSCAN4 PIR34527 RPL23AP53 PIR40691
GH08I000381 Enhancer 0.4 ENCODE 5 -150.4 -150357 2.2 ETV1 ZNF48 FAM87A LOC105377773 RPL23AP53 FBXO25 GC08M000366
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23AP53 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL23AP53 Gene

Genomic Locations for RPL23AP53 Gene
chr8:208,344-232,318
(GRCh38/hg38)
Size:
23,975 bases
Orientation:
Minus strand
chr8:158,344-182,318
(GRCh37/hg19)

Genomic View for RPL23AP53 Gene

Genes around RPL23AP53 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP53 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP53 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP53 Gene

Proteins for RPL23AP53 Gene

Post-translational modifications for RPL23AP53 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP53 Gene

Domains & Families for RPL23AP53 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP53 Gene

Function for RPL23AP53 Gene

Phenotypes From GWAS Catalog for RPL23AP53 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP53 Gene

Localization for RPL23AP53 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP53 Gene

Pathways & Interactions for RPL23AP53 Gene

SuperPathways for RPL23AP53 Gene

No Data Available

Interacting Proteins for RPL23AP53 Gene

Gene Ontology (GO) - Biological Process for RPL23AP53 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP53 Gene

Drugs & Compounds for RPL23AP53 Gene

No Compound Related Data Available

Transcripts for RPL23AP53 Gene

mRNA/cDNA for RPL23AP53 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP53 Gene

Ribosomal protein L23a pseudogene 53:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP53 Gene

No ASD Table

Relevant External Links for RPL23AP53 Gene

GeneLoc Exon Structure for
RPL23AP53
ECgene alternative splicing isoforms for
RPL23AP53

Expression for RPL23AP53 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP53 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP53 Gene:

RPL23AP53

SOURCE GeneReport for Unigene cluster for RPL23AP53 Gene:

Hs.652159
genes like me logo Genes that share expression patterns with RPL23AP53: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP53 Gene

Orthologs for RPL23AP53 Gene

Evolution for RPL23AP53 Gene

ENSEMBL:
Gene Tree for RPL23AP53 (if available)
TreeFam:
Gene Tree for RPL23AP53 (if available)

No data available for Orthologs for RPL23AP53 Gene

Paralogs for RPL23AP53 Gene

No data available for Paralogs for RPL23AP53 Gene

Variants for RPL23AP53 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP53 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000045458 -- 217,458(-) TTAATTA/TTA intron_variant
rs1000089151 -- 225,495(-) A/C/T intron_variant
rs1000118171 -- 229,141(-) G/C intron_variant
rs1000141985 -- 209,959(-) T/C non_coding_transcript_variant
rs1000164357 -- 212,426(-) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP53 Gene

Variant ID Type Subtype PubMed ID
dgv1350e214 CNV gain 21293372
dgv6788n100 CNV gain 25217958
dgv6789n100 CNV gain 25217958
dgv6790n100 CNV gain 25217958
dgv6791n100 CNV gain 25217958
esv26079 CNV gain+loss 19812545
esv2759581 CNV gain+loss 17122850
esv2761228 CNV gain+loss 21179565
nsv1023686 CNV gain 25217958
nsv1030422 CNV gain 25217958
nsv1030576 CNV gain 25217958
nsv1031378 CNV loss 25217958
nsv428193 CNV gain+loss 18775914
nsv465263 CNV gain 19166990
nsv465264 CNV loss 19166990
nsv470163 CNV loss 18288195
nsv471521 CNV gain 19718026
nsv520036 CNV gain 19592680
nsv524542 CNV gain 19592680
nsv527387 CNV gain 19592680
nsv6034 CNV insertion 18451855
nsv609448 CNV loss 21841781
nsv609449 CNV gain 21841781
nsv609450 CNV gain 21841781
nsv609451 CNV loss 21841781
nsv8254 CNV gain 18304495
nsv831205 CNV loss 17160897
nsv831206 CNV loss 17160897
nsv971613 CNV duplication 23825009
nsv981990 CNV duplication 23825009

Additional Variant Information for RPL23AP53 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP53

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP53 Gene

Disorders for RPL23AP53 Gene

Additional Disease Information for RPL23AP53

No disorders were found for RPL23AP53 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP53 Gene

Publications for RPL23AP53 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPL23AP53 Gene

Sources for RPL23AP53 Gene

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