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Aliases for RPL23AP48 Gene

Subcategory (RNA class) for RPL23AP48 Gene

lncRNA

Aliases for RPL23AP48 Gene

  • Ribosomal Protein L23a Pseudogene 48 2 3 5
  • RPL23A_16_748 3

External Ids for RPL23AP48 Gene

ORGUL Members for RPL23AP48 Gene

Previous GeneCards Identifiers for RPL23AP48 Gene

  • GC06M122043
  • GC06M122002

Summaries for RPL23AP48 Gene

GeneCards Summary for RPL23AP48 Gene

RPL23AP48 (Ribosomal Protein L23a Pseudogene 48) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP48 Gene

Genomics for RPL23AP48 Gene

Regulatory Elements for RPL23AP48 Gene

Enhancers for RPL23AP48 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G121666 1.2 Ensembl ENCODE 0.4 +13.5 13540 1.2 INSM2 FEZF1 ZEB1 GATA2 ZNF366 ZSCAN5C ZNF350 RCOR1 FOS SP3 RNU2-8P RNU4-76P RPL23AP48 SLC25A5P7
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP48 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP48 Gene

Chromosome:
6
Start:
121,679,972 bp from pter
End:
121,680,459 bp from pter
Size:
488 bases
Orientation:
Minus strand

Genomic View for RPL23AP48 Gene

Genes around RPL23AP48 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP48 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP48 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP48 Gene

Proteins for RPL23AP48 Gene

Post-translational modifications for RPL23AP48 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP48 Gene

Domains & Families for RPL23AP48 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP48 Gene

Function for RPL23AP48 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP48 Gene

Localization for RPL23AP48 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP48 Gene

Pathways & Interactions for RPL23AP48 Gene

SuperPathways for RPL23AP48 Gene

No Data Available

Interacting Proteins for RPL23AP48 Gene

Gene Ontology (GO) - Biological Process for RPL23AP48 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP48 Gene

Drugs & Compounds for RPL23AP48 Gene

No Compound Related Data Available

Transcripts for RPL23AP48 Gene

mRNA/cDNA for RPL23AP48 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP48 Gene

No ASD Table

Relevant External Links for RPL23AP48 Gene

GeneLoc Exon Structure for
RPL23AP48
ECgene alternative splicing isoforms for
RPL23AP48

Expression for RPL23AP48 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP48 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP48 Gene:

RPL23AP48
genes like me logo Genes that share expression patterns with RPL23AP48: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP48 Gene

Orthologs for RPL23AP48 Gene

Evolution for RPL23AP48 Gene

ENSEMBL:
Gene Tree for RPL23AP48 (if available)
TreeFam:
Gene Tree for RPL23AP48 (if available)

No data available for Orthologs for RPL23AP48 Gene

Paralogs for RPL23AP48 Gene

No data available for Paralogs for RPL23AP48 Gene

Variants for RPL23AP48 Gene

Relevant External Links for RPL23AP48 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP48

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP48 Gene

Disorders for RPL23AP48 Gene

Relevant External Links for RPL23AP48

Genetic Association Database (GAD)
RPL23AP48

No disorders were found for RPL23AP48 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP48 Gene

Publications for RPL23AP48 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association analysis identifies multiple loci related to resting heart rate. (PMID: 20639392) Eijgelsheim M. … O'Donnell C.J. (Hum. Mol. Genet. 2010) 46 64
  3. A large-scale genome-wide association study of Asian populations uncovers genetic factors influencing eight quantitative traits. (PMID: 19396169) Cho Y.S. … Kim H.L. (Nat. Genet. 2009) 46 64
  4. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel D.P. … Karasik D. (BMC Med. Genet. 2007) 46 64

Products for RPL23AP48 Gene

Sources for RPL23AP48 Gene

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