Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL23AP42 Gene

Aliases for RPL23AP42 Gene

  • Ribosomal Protein L23a Pseudogene 42 2 3 5
  • RPL23A_13_431 3
  • HCG16001 3

External Ids for RPL23AP42 Gene

Previous GeneCards Identifiers for RPL23AP42 Gene

  • GC03M162615
  • GC03M161145

Summaries for RPL23AP42 Gene

GeneCards Summary for RPL23AP42 Gene

RPL23AP42 (Ribosomal Protein L23a Pseudogene 42) is a Pseudogene.

Additional gene information for RPL23AP42 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP42 Gene

Genomics for RPL23AP42 Gene

Regulatory Elements for RPL23AP42 Gene

Enhancers for RPL23AP42 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H160446 1.6 Ensembl ENCODE dbSUPER 18 +980.2 980181 5 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 CBX5 ZNF207 ZNF143 FOS RPL23AP42 B3GAT3P1 TRIM59 SCARNA7 SMC4 ENSG00000248710 GC03P160413
GH03H161265 1.4 Ensembl ENCODE dbSUPER 9.8 +162.4 162448 3 PKNOX1 FOXA2 SIN3A ZBTB7B RAD21 RARA YY1 ZNF366 SCRT2 FOS SPTSSB PSMC1P7 RPL23AP42 LINC02067 LOC105374187 ENSG00000271052
GH03H161371 1.2 ENCODE dbSUPER 10 +57.3 57272 2 HDGF PKNOX1 SIN3A ZNF2 ZBTB7B YY1 ETS1 GLIS2 ELK1 ZNF207 SPTSSB PSMC1P7 SMC4 RPL23AP42 LINC02067 B3GALNT1
GH03H161322 1.2 ENCODE dbSUPER 9.9 +105.9 105947 2 ELF3 FOXA2 ATF1 MLX DNMT3B ZSCAN9 RARA SCRT2 FOS CREM SPTSSB RPL23AP42 LINC02067 PSMC1P7 GC03M161325 LOC105374187
GH03H161220 1.1 ENCODE 10 +207.7 207740 3 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 ZNF207 DEK SPTSSB B3GALNT1 PSMC1P7 NMD3 RPL23AP42 EEF1GP4 ENSG00000271052 LOC105374186
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP42 on UCSC Golden Path with GeneCards custom track

Promoters for RPL23AP42 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000161309 219 399

Genomic Location for RPL23AP42 Gene

Chromosome:
3
Start:
161,429,072 bp from pter
End:
161,429,620 bp from pter
Size:
549 bases
Orientation:
Minus strand

Genomic View for RPL23AP42 Gene

Genes around RPL23AP42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP42 Gene

Proteins for RPL23AP42 Gene

Post-translational modifications for RPL23AP42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP42 Gene

Domains & Families for RPL23AP42 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP42 Gene

Function for RPL23AP42 Gene

Phenotypes From GWAS Catalog for RPL23AP42 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL23AP42
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP42 Gene

Localization for RPL23AP42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP42 Gene

Pathways & Interactions for RPL23AP42 Gene

SuperPathways for RPL23AP42 Gene

No Data Available

Interacting Proteins for RPL23AP42 Gene

Gene Ontology (GO) - Biological Process for RPL23AP42 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP42 Gene

Drugs & Compounds for RPL23AP42 Gene

No Compound Related Data Available

Transcripts for RPL23AP42 Gene

mRNA/cDNA for RPL23AP42 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL23AP42
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP42 Gene

No ASD Table

Relevant External Links for RPL23AP42 Gene

GeneLoc Exon Structure for
RPL23AP42
ECgene alternative splicing isoforms for
RPL23AP42

Expression for RPL23AP42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP42 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP42 Gene:

RPL23AP42
genes like me logo Genes that share expression patterns with RPL23AP42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP42 Gene

Orthologs for RPL23AP42 Gene

Evolution for RPL23AP42 Gene

ENSEMBL:
Gene Tree for RPL23AP42 (if available)
TreeFam:
Gene Tree for RPL23AP42 (if available)

No data available for Orthologs for RPL23AP42 Gene

Paralogs for RPL23AP42 Gene

No data available for Paralogs for RPL23AP42 Gene

Variants for RPL23AP42 Gene

Relevant External Links for RPL23AP42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP42 Gene

Disorders for RPL23AP42 Gene

Relevant External Links for RPL23AP42

Genetic Association Database (GAD)
RPL23AP42

No disorders were found for RPL23AP42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP42 Gene

Publications for RPL23AP42 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Proteomic analysis of integrin-associated complexes identifies RCC2 as a dual regulator of Rac1 and Arf6. (PMID: 19738201) Humphries JD … Humphries MJ (Science signaling 2009) 3 60
  3. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox CS … Atwood LD (BMC medical genetics 2007) 45 60
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 60
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 60

Products for RPL23AP42 Gene

Sources for RPL23AP42 Gene

Content
Loading form....