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Aliases for RPL23AP32 Gene

Subcategory (RNA class) for RPL23AP32 Gene

lncRNA

Aliases for RPL23AP32 Gene

  • Ribosomal Protein L23a Pseudogene 32 2 3
  • RPL23A_9_220 3

External Ids for RPL23AP32 Gene

ORGUL Members for RPL23AP32 Gene

Previous GeneCards Identifiers for RPL23AP32 Gene

  • GC02P054608
  • GC02P054756
  • GC02P054488

Summaries for RPL23AP32 Gene

Entrez Gene Summary for RPL23AP32 Gene

  • This locus represents a transcribed pseudogene of ribosomal protein L23a. [provided by RefSeq, Aug 2011]

GeneCards Summary for RPL23AP32 Gene

RPL23AP32 (Ribosomal Protein L23a Pseudogene 32) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP32 Gene

Genomics for RPL23AP32 Gene

Regulatory Elements for RPL23AP32 Gene

Genomic Location for RPL23AP32 Gene

Start:
54,529,222 bp from pter
End:
54,529,841 bp from pter
Size:
620 bases
Orientation:
Plus strand

Genomic View for RPL23AP32 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RPL23AP32 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP32 Gene

Proteins for RPL23AP32 Gene

Post-translational modifications for RPL23AP32 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP32 Gene

Domains for RPL23AP32 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP32 Gene

Function for RPL23AP32 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for RPL23AP32 Gene

Localization for RPL23AP32 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP32 Gene

Pathways for RPL23AP32 Gene

SuperPathways for RPL23AP32 Gene

No Data Available

Interacting Proteins for RPL23AP32 Gene

Gene Ontology (GO) - Biological Process for RPL23AP32 Gene

None

No data available for Pathways by source for RPL23AP32 Gene

Transcripts for RPL23AP32 Gene

mRNA/cDNA for RPL23AP32 Gene

(6) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP32 Gene

Ribosomal protein L23a pseudogene 32:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL23AP32
    • Block miRNA regulation of RPL23AP32 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for RPL23AP32

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for RPL23AP32
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP32 Gene

    No ASD Table

    Relevant External Links for RPL23AP32 Gene

    GeneLoc Exon Structure for
    RPL23AP32
    ECgene alternative splicing isoforms for
    RPL23AP32

    Expression for RPL23AP32 Gene

    mRNA expression in normal human tissues for RPL23AP32 Gene

    mRNA differential expression in normal tissues according to GTEx for RPL23AP32 Gene

    This gene is overexpressed in Brain - Amygdala (4.2).

    SOURCE GeneReport for Unigene cluster for RPL23AP32 Gene Hs.657366

    genes like me logo Genes that share expressions with RPL23AP32: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for RPL23AP32 Gene

    Orthologs for RPL23AP32 Gene

    This gene was present in the common ancestor of human and mouse.

    Orthologs for RPL23AP32 Gene

    Organism Taxonomy Gene Similarity Type Details
    mouse
    (Mus musculus)
    Mammalia Gm3362 16
    Species with no ortholog for RPL23AP32:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • chimpanzee (Pan troglodytes)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for RPL23AP32 Gene

    ENSEMBL:
    Gene Tree for RPL23AP32 (if available)
    TreeFam:
    Gene Tree for RPL23AP32 (if available)

    Paralogs for RPL23AP32 Gene

    No data available for Paralogs for RPL23AP32 Gene

    Variants for RPL23AP32 Gene

    Structural Variations from Database of Genomic Variants (DGV) for RPL23AP32 Gene

    Variant ID Type Subtype PubMed ID
    esv2720078 CNV Deletion 23290073
    dgv4144n71 CNV Loss 21882294
    nsv518406 CNV Loss 19592680
    nsv2731 CNV Loss 18451855

    Relevant External Links for RPL23AP32 Gene

    HapMap Linkage Disequilibrium report
    RPL23AP32

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for RPL23AP32 Gene

    Disorders for RPL23AP32 Gene

    Relevant External Links for RPL23AP32

    Genetic Association Database (GAD)
    RPL23AP32
    genes like me logo Genes that share disorders with RPL23AP32: view

    No data available for UniProtKB/Swiss-Prot for RPL23AP32 Gene

    Publications for RPL23AP32 Gene

    1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3
    2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for RPL23AP32 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate RPL23AP32
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for RPL23AP32
      • Block miRNA regulation of RPL23AP32 using miScript Target Protectors

      Sources for RPL23AP32 Gene

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