Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL23AP32 Gene

Subcategory (RNA class) for RPL23AP32 Gene

lncRNA

Aliases for RPL23AP32 Gene

  • Ribosomal Protein L23a Pseudogene 32 2 3 5
  • RPL23A_9_220 3

External Ids for RPL23AP32 Gene

ORGUL Members for RPL23AP32 Gene

Previous GeneCards Identifiers for RPL23AP32 Gene

  • GC02P054608
  • GC02P054756
  • GC02P054488

Summaries for RPL23AP32 Gene

Entrez Gene Summary for RPL23AP32 Gene

  • This locus represents a transcribed pseudogene of ribosomal protein L23a. [provided by RefSeq, Aug 2011]

GeneCards Summary for RPL23AP32 Gene

RPL23AP32 (Ribosomal Protein L23a Pseudogene 32) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP32 Gene

Genomics for RPL23AP32 Gene

Regulatory Elements for RPL23AP32 Gene

Enhancers for RPL23AP32 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G054664 1.5 Ensembl ENCODE dbSUPER 4.6 +138.5 138514 6.4 FOXA2 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 SLC30A9 ZNF143 EML6 ACYP2 PRORSD1P RPL23AP32 LOC105374653 GC02P054651
GH02G054638 0.8 dbSUPER 4.3 +111.7 111686 5.0 FEZF1 EBF1 BMI1 RAD21 YY1 POLR2A EED RELB IKZF2 CREM SPTBN1 EML6 LOC105374667 RNU7-172P RPL23AP32 GC02M054633 GC02P054642
GH02G054652 0.8 dbSUPER 4.3 +125.7 125723 5.3 HDAC1 CTCF FOXA2 PKNOX1 MAX RAD21 ZNF644 FOSL1 ZNF316 POLR2A EML6 SPTBN1 RPL23AP32 GC02P054651 LOC105374653
GH02G054650 0.5 dbSUPER 4.3 +121.5 121507 1.3 PAF1 RFX1 HLF ZBTB40 ZBTB17 EML6 RPL23AP32 GC02P054651 GC02P054642
GH02G054523 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.6 -4592 2.6 HDGF ZNF146 FOXA2 JUN ZMYM3 SIN3A EBF1 ZBTB40 YY1 FOSL1 EML6 SPTBN1 ACYP2 RNU7-172P RPL23AP32 GC02P054516
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP32 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP32 Gene

Chromosome:
2
Start:
54,529,222 bp from pter
End:
54,529,841 bp from pter
Size:
620 bases
Orientation:
Plus strand

Genomic View for RPL23AP32 Gene

Genes around RPL23AP32 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP32 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP32 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP32 Gene

Proteins for RPL23AP32 Gene

Post-translational modifications for RPL23AP32 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP32 Gene

Domains & Families for RPL23AP32 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP32 Gene

Function for RPL23AP32 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP32 Gene

Localization for RPL23AP32 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP32 Gene

Pathways & Interactions for RPL23AP32 Gene

SuperPathways for RPL23AP32 Gene

No Data Available

Interacting Proteins for RPL23AP32 Gene

Gene Ontology (GO) - Biological Process for RPL23AP32 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP32 Gene

Drugs & Compounds for RPL23AP32 Gene

No Compound Related Data Available

Transcripts for RPL23AP32 Gene

mRNA/cDNA for RPL23AP32 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP32 Gene

Ribosomal protein L23a pseudogene 32:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP32 Gene

No ASD Table

Relevant External Links for RPL23AP32 Gene

GeneLoc Exon Structure for
RPL23AP32
ECgene alternative splicing isoforms for
RPL23AP32

Expression for RPL23AP32 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP32 Gene

mRNA differential expression in normal tissues according to GTEx for RPL23AP32 Gene

This gene is overexpressed in Brain - Amygdala (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP32 Gene:

RPL23AP32

SOURCE GeneReport for Unigene cluster for RPL23AP32 Gene:

Hs.657366
genes like me logo Genes that share expression patterns with RPL23AP32: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP32 Gene

Orthologs for RPL23AP32 Gene

Evolution for RPL23AP32 Gene

ENSEMBL:
Gene Tree for RPL23AP32 (if available)
TreeFam:
Gene Tree for RPL23AP32 (if available)

No data available for Orthologs for RPL23AP32 Gene

Paralogs for RPL23AP32 Gene

No data available for Paralogs for RPL23AP32 Gene

Variants for RPL23AP32 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP32 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000401435 -- 54,530,298(+) TAATT(C/G)TCACC intron-variant, downstream-variant-500B
rs1000824143 -- 54,527,356(+) GTGAC(A/G)AGTAA intron-variant, upstream-variant-2KB
rs1001088164 -- 54,527,663(+) AAGCA(C/G)GCTCC intron-variant, upstream-variant-2KB
rs1002534249 -- 54,528,831(+) AAATA(C/T)TGAAA intron-variant, upstream-variant-2KB
rs1003087368 -- 54,529,027(+) ACTAT(A/C)TGCTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP32 Gene

Variant ID Type Subtype PubMed ID
esv2720078 CNV deletion 23290073
nsv2731 CNV deletion 18451855
nsv518406 CNV loss 19592680
nsv961776 CNV duplication 23825009

Relevant External Links for RPL23AP32 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP32

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP32 Gene

Disorders for RPL23AP32 Gene

Relevant External Links for RPL23AP32

Genetic Association Database (GAD)
RPL23AP32
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL23AP32

No disorders were found for RPL23AP32 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP32 Gene

Publications for RPL23AP32 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPL23AP32 Gene

Sources for RPL23AP32 Gene

Content
Loading form....