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Aliases for RPL23AP32 Gene

Subcategory (RNA class) for RPL23AP32 Gene

lncRNA

Aliases for RPL23AP32 Gene

  • Ribosomal Protein L23a Pseudogene 32 2 3 5
  • RPL23A_9_220 3

External Ids for RPL23AP32 Gene

ORGUL Members for RPL23AP32 Gene

Previous GeneCards Identifiers for RPL23AP32 Gene

  • GC02P054608
  • GC02P054756
  • GC02P054488

Summaries for RPL23AP32 Gene

Entrez Gene Summary for RPL23AP32 Gene

  • This locus represents a transcribed pseudogene of ribosomal protein L23a. [provided by RefSeq, Aug 2011]

GeneCards Summary for RPL23AP32 Gene

RPL23AP32 (Ribosomal Protein L23a Pseudogene 32) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL23AP32 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP32 Gene

Genomics for RPL23AP32 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP32 Gene

Promoters and enhancers for RPL23AP32 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I054529 Enhancer 0.6 dbSUPER 550.8 +0.9 856 0.5 SOX13 GATAD2A FOXA3 HMG20A RARA MAFF RCOR2 TCF7 NR2F6 SMAD4 RPL23AP32 RNU7-172P GC02M054535 ENSG00000228108 LOC105374640 SPTBN1
GH02I054527 Enhancer 0.2 dbSUPER 550.8 -1.0 -957 1.8 RPL23AP32 EML6 SPTBN1 ACYP2 RNU7-172P GC02P054516 ENSG00000228108 LOC105374640
GH02I054664 Enhancer 1.4 Ensembl ENCODE dbSUPER 4.6 +138.5 138513 6.4 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 ETS1 YY1 SLC30A9 ZNF143 EML6 ACYP2 PRORSD1P RPL23AP32 LOC105374653 ENSG00000238018 GC02P054651 SPTBN1
GH02I054638 Enhancer 0.7 dbSUPER 4.3 +111.7 111685 5 EBF1 FEZF1 BMI1 IRF4 RAD21 YY1 IKZF2 RFX1 ZNF687 RXRA SPTBN1 EML6 LOC105374667 RNU7-172P RPL23AP32 GC02P054642 GC02M054633
GH02I054652 Enhancer 0.5 dbSUPER 4.3 +125.7 125723 5.3 FOSL1 CTCF MEIS2 NFIC JUNB ELF1 REST EML6 SPTBN1 RPL23AP32 GC02P054651 LOC105374653
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23AP32 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the RPL23AP32 gene promoter:

Genomic Locations for RPL23AP32 Gene

Genomic Locations for RPL23AP32 Gene
chr2:54,529,222-54,529,841
(GRCh38/hg38)
Size:
620 bases
Orientation:
Plus strand
chr2:54,756,359-54,756,978
(GRCh37/hg19)

Genomic View for RPL23AP32 Gene

Genes around RPL23AP32 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP32 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP32 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP32 Gene

Proteins for RPL23AP32 Gene

Post-translational modifications for RPL23AP32 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP32 Gene

Domains & Families for RPL23AP32 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP32 Gene

Function for RPL23AP32 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP32 Gene

Localization for RPL23AP32 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP32 Gene

Pathways & Interactions for RPL23AP32 Gene

SuperPathways for RPL23AP32 Gene

No Data Available

Interacting Proteins for RPL23AP32 Gene

Gene Ontology (GO) - Biological Process for RPL23AP32 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP32 Gene

Drugs & Compounds for RPL23AP32 Gene

No Compound Related Data Available

Transcripts for RPL23AP32 Gene

mRNA/cDNA for RPL23AP32 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL23AP32 Gene

Ribosomal protein L23a pseudogene 32:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP32 Gene

No ASD Table

Relevant External Links for RPL23AP32 Gene

GeneLoc Exon Structure for
RPL23AP32
ECgene alternative splicing isoforms for
RPL23AP32

Expression for RPL23AP32 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP32 Gene

mRNA differential expression in normal tissues according to GTEx for RPL23AP32 Gene

This gene is overexpressed in Brain - Amygdala (x4.2).

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP32 Gene:

RPL23AP32

SOURCE GeneReport for Unigene cluster for RPL23AP32 Gene:

Hs.657366
genes like me logo Genes that share expression patterns with RPL23AP32: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP32 Gene

Orthologs for RPL23AP32 Gene

Evolution for RPL23AP32 Gene

ENSEMBL:
Gene Tree for RPL23AP32 (if available)
TreeFam:
Gene Tree for RPL23AP32 (if available)

No data available for Orthologs for RPL23AP32 Gene

Paralogs for RPL23AP32 Gene

No data available for Paralogs for RPL23AP32 Gene

Variants for RPL23AP32 Gene

Sequence variations from dbSNP and Humsavar for RPL23AP32 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000401435 -- 54,530,298(+) C/G downstream_transcript_variant
rs1000824143 -- 54,527,356(+) A/G upstream_transcript_variant
rs1001088164 -- 54,527,663(+) G/C upstream_transcript_variant
rs1002534249 -- 54,528,831(+) T/C upstream_transcript_variant
rs1003087368 -- 54,529,027(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for RPL23AP32 Gene

Variant ID Type Subtype PubMed ID
esv2720078 CNV deletion 23290073
nsv2731 CNV deletion 18451855
nsv518406 CNV loss 19592680
nsv961776 CNV duplication 23825009

Additional Variant Information for RPL23AP32 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP32

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL23AP32 Gene

Disorders for RPL23AP32 Gene

Additional Disease Information for RPL23AP32

No disorders were found for RPL23AP32 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP32 Gene

Publications for RPL23AP32 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for RPL23AP32 Gene

Sources for RPL23AP32 Gene

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