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Aliases for RPL23AP3 Gene

Aliases for RPL23AP3 Gene

  • Ribosomal Protein L23a Pseudogene 3 2 3 5
  • RPL23A_37_1729 3

External Ids for RPL23AP3 Gene

Previous GeneCards Identifiers for RPL23AP3 Gene

  • GC21U990028
  • GC21M036308
  • GC21M036310
  • GC21M037388
  • GC21M022866

Summaries for RPL23AP3 Gene

GeneCards Summary for RPL23AP3 Gene

RPL23AP3 (Ribosomal Protein L23a Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP3 Gene

Genomics for RPL23AP3 Gene

Regulatory Elements for RPL23AP3 Gene

Enhancers for RPL23AP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21G036428 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11 -413.9 -413907 3.9 CREB3L1 ARNT SIN3A ZNF2 ZNF766 FOS DEK SP3 JUNB REST MORC3 ENSG00000242553 ENSG00000228107 RPL23AP3 SETD4 ENSG00000233818 ENSG00000230479
GH21G035040 1.8 FANTOM5 ENCODE dbSUPER 10.9 +969.9 969933 11.8 HDGF PKNOX1 CREB3L1 ARID4B FEZF1 ZNF2 ZNF766 CBX5 ZNF302 ZNF143 RPL23AP3 RUNX1 RUNX1-IT1 GC21M035098
GH21G036133 1.3 ENCODE dbSUPER 11.5 -118.8 -118840 2.9 HDGF SIN3A GLI4 ZNF2 ZNF121 GLIS2 ZNF416 KLF7 ZNF548 SP3 DOPEY2 MORC3 CBR3 RPL23AP3 SETD4 CBR1 ENSG00000228107 GC21P036137
GH21G036209 1.3 Ensembl ENCODE 11.5 -194.8 -194848 4.1 SIN3A GTF3C2 GLIS2 GATA2 ZNF548 FOS ZNF263 SP3 TSHZ1 REST MORC3 DOPEY2 RIMKLBP1 RPL23AP3 LOC100133286 ENSG00000270116 LINC01436 CBR1 GC21M036214 GC21M036213
GH21G035574 1.1 ENCODE dbSUPER 11.4 +441.1 441053 1.3 INSM2 KLF17 FEZF1 ZNF2 ZNF335 ZNF366 ZSCAN5C FOS ZNF548 EGR2 MORC3 RPL23AP3 LOC100506403 RPL34P3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP3 Gene

Chromosome:
21
Start:
36,016,042 bp from pter
End:
36,016,557 bp from pter
Size:
516 bases
Orientation:
Minus strand

Genomic View for RPL23AP3 Gene

Genes around RPL23AP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP3 Gene

Proteins for RPL23AP3 Gene

Post-translational modifications for RPL23AP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP3 Gene

Domains & Families for RPL23AP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP3 Gene

Function for RPL23AP3 Gene

Molecular function for RPL23AP3 Gene

GENATLAS Biochemistry:
60S ribosomal protein L23A,pseudogene 3

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP3 Gene

Localization for RPL23AP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP3 Gene

Pathways & Interactions for RPL23AP3 Gene

SuperPathways for RPL23AP3 Gene

No Data Available

Interacting Proteins for RPL23AP3 Gene

Gene Ontology (GO) - Biological Process for RPL23AP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP3 Gene

Drugs & Compounds for RPL23AP3 Gene

No Compound Related Data Available

Transcripts for RPL23AP3 Gene

mRNA/cDNA for RPL23AP3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP3 Gene

No ASD Table

Relevant External Links for RPL23AP3 Gene

GeneLoc Exon Structure for
RPL23AP3
ECgene alternative splicing isoforms for
RPL23AP3

Expression for RPL23AP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP3 Gene:

RPL23AP3
genes like me logo Genes that share expression patterns with RPL23AP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP3 Gene

Orthologs for RPL23AP3 Gene

Evolution for RPL23AP3 Gene

ENSEMBL:
Gene Tree for RPL23AP3 (if available)
TreeFam:
Gene Tree for RPL23AP3 (if available)

No data available for Orthologs for RPL23AP3 Gene

Paralogs for RPL23AP3 Gene

No data available for Paralogs for RPL23AP3 Gene

Variants for RPL23AP3 Gene

Relevant External Links for RPL23AP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP3 Gene

Disorders for RPL23AP3 Gene

No disorders were found for RPL23AP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP3 Gene

Publications for RPL23AP3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Mapping of a novel human carbonyl reductase, CBR3, and ribosomal pseudogenes to human chromosome 21q22.2. (PMID: 9740676) Watanabe K. … Nomura T. (Genomics 1998) 2 3 64
  3. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 64

Products for RPL23AP3 Gene

Sources for RPL23AP3 Gene

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