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Aliases for RPL23AP3 Gene

Aliases for RPL23AP3 Gene

  • Ribosomal Protein L23a Pseudogene 3 2 3 5
  • RPL23A_37_1729 3

External Ids for RPL23AP3 Gene

Previous GeneCards Identifiers for RPL23AP3 Gene

  • GC21U990028
  • GC21M036308
  • GC21M036310
  • GC21M037388
  • GC21M022866

Summaries for RPL23AP3 Gene

GeneCards Summary for RPL23AP3 Gene

RPL23AP3 (Ribosomal Protein L23a Pseudogene 3) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP3 Gene

Genomics for RPL23AP3 Gene

Regulatory Elements for RPL23AP3 Gene

Enhancers for RPL23AP3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F035038 1.8 FANTOM5 Ensembl ENCODE 10.9 +970.8 970825 13.5 PKNOX1 CREB3L1 ARID4B FEZF1 ZNF2 ZNF302 ZNF143 FOS KLF13 ZNF263 C21orf140 RPL23AP3 RUNX1 RUNX1-IT1 GC21M035098
GH21F036428 1.4 FANTOM5 ENCODE 11 -413.7 -413713 3.5 ARNT CREB3L1 SIN3A ZNF2 FOS DEK SP3 JUNB REST MEF2D MORC3 ENSG00000242553 ENSG00000228107 RPL23AP3 SETD4 ENSG00000233818 ENSG00000230479 LOC105369301 ATP5J2LP
GH21F036209 1.3 Ensembl ENCODE 11.5 -194.8 -194848 4.1 SIN3A GTF3C2 GLIS2 GATA2 ZNF548 FOS ZNF263 SP3 TSHZ1 REST MORC3 DOPEY2 RPL23AP3 ENSG00000224790 LINC01436 CBR1 GC21M036213 GC21M036214 CBR3-AS1
GH21F035592 1.3 Ensembl ENCODE 11.4 +423.4 423356 0.8 ATF1 PKNOX1 ARNT CREB3L1 DMAP1 FEZF1 ZNF2 ZNF121 GATA2 ZNF548 MORC3 SETD4 RPL23AP3 RUNX1 PPP1R2P2 EZH2P1 LOC100506403
GH21F036964 1.1 ENCODE 11.4 -949.7 -949665 3.2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF548 SP3 TBX21 MORC3 HLCS ENSG00000242553 TTC3 SETD4 RPL23AP3 ENSG00000224790 PIGP RIMKLBP1 DSCR3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP3 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP3 Gene

Chromosome:
21
Start:
36,016,042 bp from pter
End:
36,016,557 bp from pter
Size:
516 bases
Orientation:
Minus strand

Genomic View for RPL23AP3 Gene

Genes around RPL23AP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP3 Gene

Proteins for RPL23AP3 Gene

Post-translational modifications for RPL23AP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP3 Gene

Domains & Families for RPL23AP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP3 Gene

Function for RPL23AP3 Gene

Molecular function for RPL23AP3 Gene

GENATLAS Biochemistry:
60S ribosomal protein L23A,pseudogene 3

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP3 Gene

Localization for RPL23AP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP3 Gene

Pathways & Interactions for RPL23AP3 Gene

SuperPathways for RPL23AP3 Gene

No Data Available

Interacting Proteins for RPL23AP3 Gene

Gene Ontology (GO) - Biological Process for RPL23AP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP3 Gene

Transcripts for RPL23AP3 Gene

mRNA/cDNA for RPL23AP3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP3 Gene

No ASD Table

Relevant External Links for RPL23AP3 Gene

GeneLoc Exon Structure for
RPL23AP3
ECgene alternative splicing isoforms for
RPL23AP3

Expression for RPL23AP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23AP3 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP3 Gene:

RPL23AP3
genes like me logo Genes that share expression patterns with RPL23AP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL23AP3 Gene

Orthologs for RPL23AP3 Gene

Evolution for RPL23AP3 Gene

ENSEMBL:
Gene Tree for RPL23AP3 (if available)
TreeFam:
Gene Tree for RPL23AP3 (if available)

No data available for Orthologs for RPL23AP3 Gene

Paralogs for RPL23AP3 Gene

No data available for Paralogs for RPL23AP3 Gene

Variants for RPL23AP3 Gene

Relevant External Links for RPL23AP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP3 Gene

Disorders for RPL23AP3 Gene

No disorders were found for RPL23AP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP3 Gene

Publications for RPL23AP3 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Mapping of a novel human carbonyl reductase, CBR3, and ribosomal pseudogenes to human chromosome 21q22.2. (PMID: 9740676) Watanabe K. … Nomura T. (Genomics 1998) 2 3 64
  3. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M. … Yaspo M.-L. (Nature 2000) 3 64

Products for RPL23AP3 Gene

Sources for RPL23AP3 Gene

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