Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL23AP25 Gene

Subcategory (RNA class) for RPL23AP25 Gene

lncRNA

Aliases for RPL23AP25 Gene

  • Ribosomal Protein L23a Pseudogene 25 2 3 5
  • RPL23A_7_192 3

External Ids for RPL23AP25 Gene

ORGUL Members for RPL23AP25 Gene

Previous GeneCards Identifiers for RPL23AP25 Gene

  • GC01P247199
  • GC01P249231

Summaries for RPL23AP25 Gene

GeneCards Summary for RPL23AP25 Gene

RPL23AP25 (Ribosomal Protein L23a Pseudogene 25) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP25 Gene

Genomics for RPL23AP25 Gene

Regulatory Elements for RPL23AP25 Gene

Enhancers for RPL23AP25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F248820 1.4 FANTOM5 ENCODE 5.1 -111.6 -111642 9.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SH3BP5L LOC105373317 ZNF692 PGBD2 RNU6-1205P RPL23AP25 MIR3124 GC01P248810
GH01F248945 0.7 ENCODE 0.4 +9.1 9056 0.2 NR2F1 REST NR2F2 POLR2A NBN HMBOX1 ZNF530 ZNF524 NR2F6 NR2C2 RPL23AP25
GH01F248934 0.2 Ensembl 0.8 -2.1 -2080 0.6 ZNF692 LOC105373317 RPL23AP25 LOC105373318
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP25 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP25 Gene

Chromosome:
1
Start:
248,936,581 bp from pter
End:
248,937,069 bp from pter
Size:
489 bases
Orientation:
Plus strand

Genomic View for RPL23AP25 Gene

Genes around RPL23AP25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP25 Gene

Proteins for RPL23AP25 Gene

Post-translational modifications for RPL23AP25 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP25 Gene

Domains & Families for RPL23AP25 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP25 Gene

Function for RPL23AP25 Gene

Phenotypes for RPL23AP25 Gene

GenomeRNAi human phenotypes for RPL23AP25:
genes like me logo Genes that share phenotypes with RPL23AP25: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP25 Gene

Localization for RPL23AP25 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP25 Gene

Pathways & Interactions for RPL23AP25 Gene

SuperPathways for RPL23AP25 Gene

No Data Available

Interacting Proteins for RPL23AP25 Gene

Gene Ontology (GO) - Biological Process for RPL23AP25 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP25 Gene

Transcripts for RPL23AP25 Gene

mRNA/cDNA for RPL23AP25 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP25 Gene

No ASD Table

Relevant External Links for RPL23AP25 Gene

GeneLoc Exon Structure for
RPL23AP25
ECgene alternative splicing isoforms for
RPL23AP25

Expression for RPL23AP25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL23AP25 Gene

mRNA differential expression in normal tissues according to GTEx for RPL23AP25 Gene

This gene is overexpressed in Testis (x6.9).

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP25 Gene:

RPL23AP25
genes like me logo Genes that share expression patterns with RPL23AP25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL23AP25 Gene

Orthologs for RPL23AP25 Gene

Evolution for RPL23AP25 Gene

ENSEMBL:
Gene Tree for RPL23AP25 (if available)
TreeFam:
Gene Tree for RPL23AP25 (if available)

No data available for Orthologs for RPL23AP25 Gene

Paralogs for RPL23AP25 Gene

No data available for Paralogs for RPL23AP25 Gene

Variants for RPL23AP25 Gene

Relevant External Links for RPL23AP25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP25 Gene

Disorders for RPL23AP25 Gene

No disorders were found for RPL23AP25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP25 Gene

Publications for RPL23AP25 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL23AP25 Gene

Sources for RPL23AP25 Gene

Content
Loading form....