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Aliases for RPL23AP17 Gene

Subcategory (RNA class) for RPL23AP17 Gene

antisense

Aliases for RPL23AP17 Gene

  • Ribosomal Protein L23a Pseudogene 17 2 3 5
  • RPL23A_3_37 3

External Ids for RPL23AP17 Gene

ORGUL Members for RPL23AP17 Gene

Previous GeneCards Identifiers for RPL23AP17 Gene

  • GC01U902314
  • GC01P041565

Summaries for RPL23AP17 Gene

GeneCards Summary for RPL23AP17 Gene

RPL23AP17 (Ribosomal Protein L23a Pseudogene 17) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for RPL23AP17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP17 Gene

Genomics for RPL23AP17 Gene

GeneHancer (GH) Regulatory Elements for RPL23AP17 Gene

Promoters and enhancers for RPL23AP17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I041098 Enhancer 0.2 FANTOM5 550.8 -0.1 -139 0.3 RPL23AP17 SLFNL1 SCMH1
GH01I041100 Enhancer 0.8 Ensembl ENCODE 0.8 +3.2 3238 2.1 MAX CEBPB RAD21 YY1 JUND POLR2A ZBTB33 HNF4A RCOR1 CHD2 SLFNL1 CTPS1 SCMH1 RPL23AP17 GC01M041130
GH01I041107 Enhancer 1.1 Ensembl ENCODE 0.4 +10.8 10802 2.9 ATF1 FOXA2 ARNT ZFP64 FEZF1 YY1 ZNF416 ATF7 FOS DEK FOXO6 ENSG00000235358 RLF CTPS1 SCMH1 RPL23AP17 GC01M041130
GH01I041123 Enhancer 1 Ensembl ENCODE 0.3 +24.7 24749 0.8 PKNOX1 FOXA2 ARID4B RAD21 ZNF121 ZSCAN5C FOS MIXL1 USF2 REST LOC101929901 FOXO6 GC01M041130 RPL23AP17 SCMH1
GH01I041044 Enhancer 0.8 Ensembl ENCODE 0.2 -53.0 -52993 3 RXRA JUN MAX RAD21 NR2F2 JUND GATA3 ATF3 POLR2A IKZF1 FOXO6 SLFNL1 CTPS1 RPL23AP17 SCMH1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around RPL23AP17 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL23AP17 Gene

Genomic Locations for RPL23AP17 Gene
chr1:41,098,638-41,099,136
(GRCh38/hg38)
Size:
499 bases
Orientation:
Plus strand
chr1:41,564,310-41,564,808
(GRCh37/hg19)

Genomic View for RPL23AP17 Gene

Genes around RPL23AP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP17 Gene

Proteins for RPL23AP17 Gene

Post-translational modifications for RPL23AP17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP17 Gene

Domains & Families for RPL23AP17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP17 Gene

Function for RPL23AP17 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP17 Gene

Localization for RPL23AP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP17 Gene

Pathways & Interactions for RPL23AP17 Gene

SuperPathways for RPL23AP17 Gene

No Data Available

Interacting Proteins for RPL23AP17 Gene

Gene Ontology (GO) - Biological Process for RPL23AP17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP17 Gene

Drugs & Compounds for RPL23AP17 Gene

No Compound Related Data Available

Transcripts for RPL23AP17 Gene

mRNA/cDNA for RPL23AP17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP17 Gene

No ASD Table

Relevant External Links for RPL23AP17 Gene

GeneLoc Exon Structure for
RPL23AP17
ECgene alternative splicing isoforms for
RPL23AP17

Expression for RPL23AP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP17 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP17 Gene:

RPL23AP17
genes like me logo Genes that share expression patterns with RPL23AP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP17 Gene

Orthologs for RPL23AP17 Gene

Evolution for RPL23AP17 Gene

ENSEMBL:
Gene Tree for RPL23AP17 (if available)
TreeFam:
Gene Tree for RPL23AP17 (if available)

No data available for Orthologs for RPL23AP17 Gene

Paralogs for RPL23AP17 Gene

No data available for Paralogs for RPL23AP17 Gene

Variants for RPL23AP17 Gene

Additional Variant Information for RPL23AP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP17 Gene

Disorders for RPL23AP17 Gene

No disorders were found for RPL23AP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP17 Gene

Publications for RPL23AP17 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 58

Products for RPL23AP17 Gene

Sources for RPL23AP17 Gene

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