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Aliases for RPL23AP17 Gene

Subcategory (RNA class) for RPL23AP17 Gene

antisense

Aliases for RPL23AP17 Gene

  • Ribosomal Protein L23a Pseudogene 17 2 3 5
  • RPL23A_3_37 3

External Ids for RPL23AP17 Gene

ORGUL Members for RPL23AP17 Gene

Previous GeneCards Identifiers for RPL23AP17 Gene

  • GC01U902314
  • GC01P041565

Summaries for RPL23AP17 Gene

GeneCards Summary for RPL23AP17 Gene

RPL23AP17 (Ribosomal Protein L23a Pseudogene 17) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP17 Gene

Genomics for RPL23AP17 Gene

Regulatory Elements for RPL23AP17 Gene

Enhancers for RPL23AP17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G041100 0.9 Ensembl ENCODE 0.7 +3.2 3239 2.1 CEBPB MAX CHD7 SUPT20H ZNF623 RAD21 NR2F2 YY1 JUND HNF4A SLFNL1 CTPS1 SCMH1 RPL23AP17 GC01M041130
GH01G041107 1.2 Ensembl ENCODE 0.4 +10.8 10802 2.9 HDGF ATF1 FOXA2 ARNT ZFP64 FEZF1 YY1 GATA2 ZNF416 ZNF143 FOXO6 ENSG00000235358 RLF ENSG00000259943 CTPS1 SCMH1 RPL23AP17 GC01M041130
GH01G041123 1.1 Ensembl ENCODE 0.3 +24.7 24749 0.8 PKNOX1 FOXA2 ARID4B RAD21 ZNF121 ZSCAN5C FOS MIXL1 USF2 REST LOC101929901 FOXO6 GC01M041130 RPL23AP17
GH01G041098 0.3 FANTOM5 0.7 -0.1 -140 0.3 SLFNL1 RPL23AP17
GH01G041044 1 Ensembl ENCODE 0.2 -53.0 -52994 3.0 JUN MAX ZIC2 RAD21 EGR1 GATA2 POLR2A SCRT2 HNF4G FOS FOXO6 SLFNL1 CTPS1 RPL23AP17
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP17 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP17 Gene

Chromosome:
1
Start:
41,098,638 bp from pter
End:
41,099,136 bp from pter
Size:
499 bases
Orientation:
Plus strand

Genomic View for RPL23AP17 Gene

Genes around RPL23AP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP17 Gene

Proteins for RPL23AP17 Gene

Post-translational modifications for RPL23AP17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP17 Gene

Domains & Families for RPL23AP17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP17 Gene

Function for RPL23AP17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP17 Gene

Localization for RPL23AP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP17 Gene

Pathways & Interactions for RPL23AP17 Gene

SuperPathways for RPL23AP17 Gene

No Data Available

Interacting Proteins for RPL23AP17 Gene

Gene Ontology (GO) - Biological Process for RPL23AP17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP17 Gene

Transcripts for RPL23AP17 Gene

mRNA/cDNA for RPL23AP17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP17 Gene

No ASD Table

Relevant External Links for RPL23AP17 Gene

GeneLoc Exon Structure for
RPL23AP17
ECgene alternative splicing isoforms for
RPL23AP17

Expression for RPL23AP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP17 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP17 Gene:

RPL23AP17
genes like me logo Genes that share expression patterns with RPL23AP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP17 Gene

Orthologs for RPL23AP17 Gene

Evolution for RPL23AP17 Gene

ENSEMBL:
Gene Tree for RPL23AP17 (if available)
TreeFam:
Gene Tree for RPL23AP17 (if available)

No data available for Orthologs for RPL23AP17 Gene

Paralogs for RPL23AP17 Gene

No data available for Paralogs for RPL23AP17 Gene

Variants for RPL23AP17 Gene

Relevant External Links for RPL23AP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP17 Gene

Disorders for RPL23AP17 Gene

No disorders were found for RPL23AP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL23AP17 Gene

Publications for RPL23AP17 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL23AP17 Gene

Sources for RPL23AP17 Gene

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