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Aliases for RPL23AP16 Gene

Aliases for RPL23AP16 Gene

  • Ribosomal Protein L23a Pseudogene 16 2 3 5
  • RPL23A_4_145 3

External Ids for RPL23AP16 Gene

Previous GeneCards Identifiers for RPL23AP16 Gene

  • GC01U902306

Summaries for RPL23AP16 Gene

GeneCards Summary for RPL23AP16 Gene

RPL23AP16 (Ribosomal Protein L23a Pseudogene 16) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP16 Gene

Genomics for RPL23AP16 Gene

Regulatory Elements for RPL23AP16 Gene

Enhancers for RPL23AP16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G199311 0.7 ENCODE 0.2 -60.2 -60154 1.3 CTCF ZBED1 JUNB DPF2 CHD7 IKZF1 EED ETV6 RELB IKZF2 RPL23AP16 LOC400800
GH01G199171 1.4 FANTOM5 ENCODE dbSUPER 0.1 -198.3 -198302 3.6 PKNOX1 TBL1XR1 BMI1 CBX5 RELB ETV6 IKZF2 CREM CBFB JUNB LOC400800 RPL23AP16
GH01G199225 1.2 Ensembl ENCODE dbSUPER 0.1 -145.3 -145261 1.5 MTA2 JUN JUNB ATF2 GABPA RELA ARID3A JUND IKZF1 TCF7 LOC400800 RPL23AP16
GH01G199271 1.1 Ensembl ENCODE 0.1 -98.9 -98869 3.2 PKNOX1 FOXA2 BMI1 BRCA1 RAD21 RFX5 GATA2 ELK1 SCRT2 RCOR1 RPL23AP16 LOC400800
GH01G199302 0.5 ENCODE 0.2 -69.1 -69129 0.2 JUND GATA2 JUN FOS RPL23AP16 LOC400800
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP16 Gene

Chromosome:
1
Start:
199,371,876 bp from pter
End:
199,372,297 bp from pter
Size:
422 bases
Orientation:
Plus strand

Genomic View for RPL23AP16 Gene

Genes around RPL23AP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL23AP16 Gene

Proteins for RPL23AP16 Gene

Post-translational modifications for RPL23AP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP16 Gene

Domains & Families for RPL23AP16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP16 Gene

Function for RPL23AP16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP16 Gene

Localization for RPL23AP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP16 Gene

Pathways & Interactions for RPL23AP16 Gene

SuperPathways for RPL23AP16 Gene

No Data Available

Interacting Proteins for RPL23AP16 Gene

Gene Ontology (GO) - Biological Process for RPL23AP16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP16 Gene

Drugs & Compounds for RPL23AP16 Gene

No Compound Related Data Available

Transcripts for RPL23AP16 Gene

mRNA/cDNA for RPL23AP16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP16 Gene

No ASD Table

Relevant External Links for RPL23AP16 Gene

GeneLoc Exon Structure for
RPL23AP16
ECgene alternative splicing isoforms for
RPL23AP16

Expression for RPL23AP16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP16 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP16 Gene:

RPL23AP16
genes like me logo Genes that share expression patterns with RPL23AP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP16 Gene

Orthologs for RPL23AP16 Gene

Evolution for RPL23AP16 Gene

ENSEMBL:
Gene Tree for RPL23AP16 (if available)
TreeFam:
Gene Tree for RPL23AP16 (if available)

No data available for Orthologs for RPL23AP16 Gene

Paralogs for RPL23AP16 Gene

No data available for Paralogs for RPL23AP16 Gene

Variants for RPL23AP16 Gene

Relevant External Links for RPL23AP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP16 Gene

Disorders for RPL23AP16 Gene

Relevant External Links for RPL23AP16

Genetic Association Database (GAD)
RPL23AP16

No disorders were found for RPL23AP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP16 Gene

Publications for RPL23AP16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes. (PMID: 21546767) Murea M. … Freedman B.I. (Am. J. Nephrol. 2011) 46 64
  3. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 46 64
  4. Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project. (PMID: 17903300) Fox C.S. … Atwood L.D. (BMC Med. Genet. 2007) 46 64
  5. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. (PMID: 17362836) Schymick J.C. … Traynor B.J. (Lancet Neurol 2007) 46 64

Products for RPL23AP16 Gene

Sources for RPL23AP16 Gene

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