Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL23AP1 Gene

Aliases for RPL23AP1 Gene

  • Ribosomal Protein L23a Pseudogene 1 2 3 5
  • RPL23A_15_676 3
  • DJ377H14.8 3

External Ids for RPL23AP1 Gene

Previous GeneCards Identifiers for RPL23AP1 Gene

  • GC06U990107
  • GC06M029465
  • GC06M029802
  • GC06M029696
  • GC06M029701
  • GC06M029705
  • GC06M029716
  • GC06M029722
  • GC06M029727
  • GC06M029740
  • GC06M029731
  • GC06M029746
  • GC06M029838
  • GC06M029854

Summaries for RPL23AP1 Gene

GeneCards Summary for RPL23AP1 Gene

RPL23AP1 (Ribosomal Protein L23a Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP1 Gene

Genomics for RPL23AP1 Gene

Regulatory Elements for RPL23AP1 Gene

Enhancers for RPL23AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F029747 0.7 ENCODE 54.6 -21.7 -21728 1.9 PKNOX1 GLI4 DMAP1 ZNF48 YY1 GLIS2 FOS SP3 SP5 NFYC RPL23AP1 MICE HCG4P5 HLA-A IFITM4P ZNRD1 HLA-H PPP1R10 ZNF311 HCG4B
GH06F029757 0.2 ENCODE 45.7 -32.0 -31982 3.3 PKNOX1 CBX3 TAL1 ZFP64 BACH1 CHD7 ETS1 ZNF316 POLR2A SCRT2 RPL23AP1 ZFP57 HCG4P5 IFITM4P MICE ZNRD1 HCG4 ZNRD1ASP ENSG00000270896 ENSG00000272236
GH06F029751 0.5 ENCODE 38.4 -25.7 -25690 2.0 PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A ZNF2 YY1 CBX5 ZNF143 RPL23AP1 MICE HCG4P5 IFITM4P ZNRD1ASP DHX16 ZFP57 ABCF1 HLA-A ETF1P1
GH06F029762 1.1 Ensembl ENCODE 37.9 -36.6 -36642 2.5 KLF1 JUN MAX ZIC2 GATA3 POLR2A SCRT2 PRDM10 FOSL2 FOS RPL23AP1 HLA-A HCG4P5 IFITM4P ZFP57 HLA-J MICD MICE HCG4P7 ZNRD1
GH06F029641 0.2 Ensembl 23.7 +85.3 85254 1.0 BCOR SMARCA5 HDGF KLF1 ZBTB2 FOXK2 ZNF366 SMARCA4 IKZF1 ZNF512 ZFP57 RPL23AP1 HLA-H HLA-F SUMO2P1 MOG
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL23AP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP1 Gene

Chromosome:
6
Start:
29,726,632 bp from pter
End:
29,727,154 bp from pter
Size:
523 bases
Orientation:
Minus strand

Genomic View for RPL23AP1 Gene

Genes around RPL23AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for RPL23AP1 Gene

Post-translational modifications for RPL23AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP1 Gene

Domains & Families for RPL23AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP1 Gene

Function for RPL23AP1 Gene

Molecular function for RPL23AP1 Gene

GENATLAS Biochemistry:
60S ribosomal protein L23A,intronless pseudogene 1

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP1 Gene

Localization for RPL23AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL23AP1 Gene

Pathways & Interactions for RPL23AP1 Gene

SuperPathways for RPL23AP1 Gene

No Data Available

Interacting Proteins for RPL23AP1 Gene

Gene Ontology (GO) - Biological Process for RPL23AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP1 Gene

Transcripts for RPL23AP1 Gene

mRNA/cDNA for RPL23AP1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP1 Gene

No ASD Table

Relevant External Links for RPL23AP1 Gene

GeneLoc Exon Structure for
RPL23AP1
ECgene alternative splicing isoforms for
RPL23AP1

Expression for RPL23AP1 Gene

mRNA expression in normal human tissues for RPL23AP1 Gene

mRNA expression in normal human tissues for RPL23AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP1 Gene:

RPL23AP1
genes like me logo Genes that share expression patterns with RPL23AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL23AP1 Gene

Orthologs for RPL23AP1 Gene

Evolution for RPL23AP1 Gene

ENSEMBL:
Gene Tree for RPL23AP1 (if available)
TreeFam:
Gene Tree for RPL23AP1 (if available)

No data available for Orthologs for RPL23AP1 Gene

Paralogs for RPL23AP1 Gene

No data available for Paralogs for RPL23AP1 Gene

Variants for RPL23AP1 Gene

Relevant External Links for RPL23AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP1 Gene

Disorders for RPL23AP1 Gene

Relevant External Links for RPL23AP1

Genetic Association Database (GAD)
RPL23AP1

No disorders were found for RPL23AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP1 Gene

Publications for RPL23AP1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Identification of seven new human MHC class I region genes around the HLA-F locus. (PMID: 8662070) Fan W. … Weissman S.M. (Immunogenetics 1996) 2 3 64
  3. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S. … Sun J. (Carcinogenesis 2012) 46 64
  4. Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with BehAset's disease. (PMID: 20622878) Remmers E.F. … GA1l A. (Nat. Genet. 2010) 46 64
  5. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. (PMID: 19525953) De Jager P.L. … Oksenberg J.R. (Nat. Genet. 2009) 46 64

Products for RPL23AP1 Gene

Sources for RPL23AP1 Gene

Content
Loading form....