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Aliases for RPL23AP1 Gene

Aliases for RPL23AP1 Gene

  • Ribosomal Protein L23a Pseudogene 1 2 3 5
  • RPL23A_15_676 3
  • DJ377H14.8 3

External Ids for RPL23AP1 Gene

Previous GeneCards Identifiers for RPL23AP1 Gene

  • GC06U990107
  • GC06M029465
  • GC06M029802
  • GC06M029696
  • GC06M029701
  • GC06M029705
  • GC06M029716
  • GC06M029722
  • GC06M029727
  • GC06M029740
  • GC06M029731
  • GC06M029746
  • GC06M029838
  • GC06M029854
  • GC06M030104
  • GC06M030173

Summaries for RPL23AP1 Gene

GeneCards Summary for RPL23AP1 Gene

RPL23AP1 (Ribosomal Protein L23a Pseudogene 1) is a Pseudogene.

Additional gene information for RPL23AP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL23AP1 Gene

Genomics for RPL23AP1 Gene

Regulatory Elements for RPL23AP1 Gene

Enhancers for RPL23AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H029747 1 ENCODE 54.6 -21.7 -21728 1 PKNOX1 SIN3A DMAP1 GLI4 YY1 GLIS2 ZNF207 FOS ATF7 SP3 RPL23AP1 MICE ENSG00000227766 HLA-A ZNRD1 IFITM4P MDC1 TRIM39 DHX16 ABCF1
GH06H029751 1.1 ENCODE 38.4 -25.7 -25690 1 PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF766 CBX5 ZNF143 RPL23AP1 MDC1 ENSG00000227766 IFITM4P ZNF311 ZNRD1ASP ZFP57 MICE HLA-A HCG18
GH06H029762 1 Ensembl ENCODE 37.9 -36.6 -36642 2 KLF1 ZSCAN26 ZBTB21 JUN MAX GATA3 SCRT2 FOSL2 FOS ZNF600 RPL23AP1 HLA-A ENSG00000227766 IFITM4P ZFP57 HLA-J MICD MICE ERVK9-12 ZNRD1
GH06H029757 0.8 ENCODE 45.8 -32.0 -31982 3 PKNOX1 TAL1 ZFP64 BACH1 ETS1 TCF12 ZNF316 POLR2A NFYB SCRT2 RPL23AP1 ZFP57 ENSG00000227766 IFITM4P MICE ZNRD1 HCG4 ZNRD1ASP ENSG00000270896 ENSG00000272236
GH06H030100 1.7 FANTOM5 Ensembl ENCODE 20.3 -374.9 -374927 3 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 SLC30A9 ZNF143 SP3 SP5 HLA-K RPL23AP1 TRIM31-AS1 HCG4 MICD ZNRD1ASP ENSG00000237669 HLA-J ABCF1 HLA-W
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL23AP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL23AP1 Gene

Chromosome:
6
Start:
29,726,632 bp from pter
End:
29,727,154 bp from pter
Size:
523 bases
Orientation:
Minus strand

Genomic View for RPL23AP1 Gene

Genes around RPL23AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL23AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL23AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for RPL23AP1 Gene

Post-translational modifications for RPL23AP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL23AP1 Gene

Domains & Families for RPL23AP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL23AP1 Gene

Function for RPL23AP1 Gene

Molecular function for RPL23AP1 Gene

GENATLAS Biochemistry:
60S ribosomal protein L23A,intronless pseudogene 1

Phenotypes From GWAS Catalog for RPL23AP1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL23AP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL23AP1 Gene

Localization for RPL23AP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL23AP1 Gene

Pathways & Interactions for RPL23AP1 Gene

SuperPathways for RPL23AP1 Gene

No Data Available

Interacting Proteins for RPL23AP1 Gene

Gene Ontology (GO) - Biological Process for RPL23AP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL23AP1 Gene

Drugs & Compounds for RPL23AP1 Gene

No Compound Related Data Available

Transcripts for RPL23AP1 Gene

mRNA/cDNA for RPL23AP1 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL23AP1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL23AP1 Gene

No ASD Table

Relevant External Links for RPL23AP1 Gene

GeneLoc Exon Structure for
RPL23AP1
ECgene alternative splicing isoforms for
RPL23AP1

Expression for RPL23AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL23AP1 Gene

mRNA expression in normal human tissues for RPL23AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL23AP1 Gene:

RPL23AP1
genes like me logo Genes that share expression patterns with RPL23AP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL23AP1 Gene

Orthologs for RPL23AP1 Gene

Evolution for RPL23AP1 Gene

ENSEMBL:
Gene Tree for RPL23AP1 (if available)
TreeFam:
Gene Tree for RPL23AP1 (if available)

No data available for Orthologs for RPL23AP1 Gene

Paralogs for RPL23AP1 Gene

No data available for Paralogs for RPL23AP1 Gene

Variants for RPL23AP1 Gene

Relevant External Links for RPL23AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL23AP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL23AP1 Gene

Disorders for RPL23AP1 Gene

Relevant External Links for RPL23AP1

Genetic Association Database (GAD)
RPL23AP1

No disorders were found for RPL23AP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL23AP1 Gene

Publications for RPL23AP1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Identification of seven new human MHC class I region genes around the HLA-F locus. (PMID: 8662070) Fan W … Weissman SM (Immunogenetics 1996) 2 3 60
  3. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S … Sun J (Carcinogenesis 2012) 45 60
  4. Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with Behçet's disease. (PMID: 20622878) Remmers EF … Gül A (Nature genetics 2010) 45 60
  5. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. (PMID: 19525953) De Jager PL … Oksenberg JR (Nature genetics 2009) 45 60

Products for RPL23AP1 Gene

Sources for RPL23AP1 Gene

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