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Aliases for RPL22P16 Gene

Subcategory (RNA class) for RPL22P16 Gene

lncRNA

Aliases for RPL22P16 Gene

  • Ribosomal Protein L22 Pseudogene 16 2 3
  • RPL22_6_780 3
  • AC092610.12 5

External Ids for RPL22P16 Gene

ORGUL Members for RPL22P16 Gene

Previous GeneCards Identifiers for RPL22P16 Gene

  • GC07U902610
  • GC07M004907
  • GC07M004908
  • GC07M004909

Summaries for RPL22P16 Gene

GeneCards Summary for RPL22P16 Gene

RPL22P16 (Ribosomal Protein L22 Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL22P16 Gene

Genomics for RPL22P16 Gene

Regulatory Elements for RPL22P16 Gene

Enhancers for RPL22P16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F005551 1.6 FANTOM5 ENCODE 16.2 -690.0 -689973 7.6 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC USP42 RPL22P16 AP5Z1 ANKRD61 ZNF890P EIF2AK1 CCZ1 ACTB WIPI2 ENSG00000272719
GH07F005416 1.6 FANTOM5 ENCODE 16.2 -558.2 -558177 15.1 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC RNF216P1 RPL22P16 USP42 TNRC18 FBXL18 ENSG00000188365
GH07F005591 1.5 FANTOM5 ENCODE 16.2 -729.6 -729649 8.6 HDGF PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 C7orf26 AP5Z1 RPL22P16 CCZ1 USP42 FSCN1 ACTB FBXL18 AIMP2 RNF216-IT1
GH07F004681 1.1 ENCODE 16.2 +182.2 182232 4.4 HDGF CREB3L1 WRNIP1 ARID4B SIN3A YBX1 YY1 ZNF416 ZNF143 ZNF207 RPL22P16 AP5Z1 ENSG00000188365 FOXK1 RNF216P1 TNRC18 SNORD13P2
GH07F004881 0.9 ENCODE 0.3 -17.0 -16996 2.2 TBP KLF17 SIN3A RAD21 GLIS2 ZNF143 CREM THAP11 SP3 SP5 RADIL RPL22P16
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL22P16 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL22P16 Gene

Chromosome:
7
Start:
4,865,430 bp from pter
End:
4,865,804 bp from pter
Size:
375 bases
Orientation:
Minus strand

Genomic View for RPL22P16 Gene

Genes around RPL22P16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL22P16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL22P16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL22P16 Gene

Proteins for RPL22P16 Gene

Post-translational modifications for RPL22P16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL22P16 Gene

Domains & Families for RPL22P16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL22P16 Gene

Function for RPL22P16 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL22P16 Gene

Localization for RPL22P16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL22P16 Gene

Pathways & Interactions for RPL22P16 Gene

SuperPathways for RPL22P16 Gene

No Data Available

Interacting Proteins for RPL22P16 Gene

Gene Ontology (GO) - Biological Process for RPL22P16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL22P16 Gene

Transcripts for RPL22P16 Gene

mRNA/cDNA for RPL22P16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL22P16 Gene

No ASD Table

Relevant External Links for RPL22P16 Gene

GeneLoc Exon Structure for
RPL22P16
ECgene alternative splicing isoforms for
RPL22P16

Expression for RPL22P16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL22P16 Gene

mRNA differential expression in normal tissues according to GTEx for RPL22P16 Gene

This gene is overexpressed in Testis (x47.6) and Brain - Cerebellum (x5.4).

NURSA nuclear receptor signaling pathways regulating expression of RPL22P16 Gene:

RPL22P16
genes like me logo Genes that share expression patterns with RPL22P16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL22P16 Gene

Orthologs for RPL22P16 Gene

Evolution for RPL22P16 Gene

ENSEMBL:
Gene Tree for RPL22P16 (if available)
TreeFam:
Gene Tree for RPL22P16 (if available)

No data available for Orthologs for RPL22P16 Gene

Paralogs for RPL22P16 Gene

No data available for Paralogs for RPL22P16 Gene

Variants for RPL22P16 Gene

Relevant External Links for RPL22P16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL22P16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL22P16 Gene

Disorders for RPL22P16 Gene

No disorders were found for RPL22P16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL22P16 Gene

Publications for RPL22P16 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL22P16 Gene

Sources for RPL22P16 Gene

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