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Aliases for RPL22P1 Gene

Subcategory (RNA class) for RPL22P1 Gene

lncRNA

Aliases for RPL22P1 Gene

  • Ribosomal Protein L22 Pseudogene 1 2 3
  • Epstein-Barr Virus Small RNA-Associated Protein Pseudogene 1 3
  • Epstein-Barr-Encoded RNA-Associated Protein Pseudogene 1 3
  • EBER-Associated Protein Pseudogene 1 3
  • RP11-641D5.1 5
  • RPL22_5_435 3

External Ids for RPL22P1 Gene

ORGUL Members for RPL22P1 Gene

Previous GeneCards Identifiers for RPL22P1 Gene

  • GC03U990236
  • GC03M169202

Summaries for RPL22P1 Gene

GeneCards Summary for RPL22P1 Gene

RPL22P1 (Ribosomal Protein L22 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL22P1 Gene

Genomics for RPL22P1 Gene

Regulatory Elements for RPL22P1 Gene

Enhancers for RPL22P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F169763 0.4 ENCODE 19.7 -280.4 -280403 2.9 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 SEC62-AS1 ENSG00000239628 RPL22P1 PRKCI LRRC34 ENSG00000277925 PIR60567
GH03F169964 0.2 ENCODE 12.8 -482.9 -482868 3.9 PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 LOC100128164 RPL22P1 SEC62-AS1 PRKCI LRRC31 GPR160 ENSG00000270096
GH03F170043 0.8 FANTOM5 Ensembl ENCODE 11.4 -563.1 -563143 7.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 GPR160 ENSG00000239628 SEC62-AS1 RPL22P1 LOC100128164 SEC62 LRRC34 LRRIQ4 SKIL GC03P170058
GH03F170221 0.8 FANTOM5 ENCODE 11.4 -738.9 -738944 2.8 HDGF PKNOX1 ARNT CREB3L1 SIN3A ZNF2 YY1 SLC30A9 CBX5 ZNF143 ENSG00000239628 ENSG00000270096 PRKCI SEC62-AS1 RPL22P1 GPR160 ENSG00000270135 MYNN PHC3 LRRIQ4
GH03F168858 0.2 ENCODE 10 +623.8 623768 3.4 ELF3 ZFP64 ARID4B YY1 GATA4 ZNF354C CREM MIXL1 THAP11 ZNF202 EGFEM1P ENSG00000270096 RPL22P1 ENSG00000270135 RPL21P43 LINC02082
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL22P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL22P1 Gene

Chromosome:
3
Start:
169,483,618 bp from pter
End:
169,484,080 bp from pter
Size:
463 bases
Orientation:
Minus strand

Genomic View for RPL22P1 Gene

Genes around RPL22P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL22P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL22P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL22P1 Gene

Proteins for RPL22P1 Gene

Post-translational modifications for RPL22P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL22P1 Gene

Domains & Families for RPL22P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL22P1 Gene

Function for RPL22P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL22P1 Gene

Localization for RPL22P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL22P1 Gene

Pathways & Interactions for RPL22P1 Gene

SuperPathways for RPL22P1 Gene

No Data Available

Interacting Proteins for RPL22P1 Gene

Gene Ontology (GO) - Biological Process for RPL22P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL22P1 Gene

Transcripts for RPL22P1 Gene

mRNA/cDNA for RPL22P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL22P1 Gene

No ASD Table

Relevant External Links for RPL22P1 Gene

GeneLoc Exon Structure for
RPL22P1
ECgene alternative splicing isoforms for
RPL22P1

Expression for RPL22P1 Gene

mRNA expression in normal human tissues for RPL22P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL22P1 Gene:

RPL22P1
genes like me logo Genes that share expression patterns with RPL22P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL22P1 Gene

Orthologs for RPL22P1 Gene

Evolution for RPL22P1 Gene

ENSEMBL:
Gene Tree for RPL22P1 (if available)
TreeFam:
Gene Tree for RPL22P1 (if available)

No data available for Orthologs for RPL22P1 Gene

Paralogs for RPL22P1 Gene

No data available for Paralogs for RPL22P1 Gene

Variants for RPL22P1 Gene

Relevant External Links for RPL22P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL22P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL22P1 Gene

Disorders for RPL22P1 Gene

Relevant External Links for RPL22P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL22P1

No disorders were found for RPL22P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL22P1 Gene

Publications for RPL22P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. AML1 fusion transcripts in t(3;21) positive leukemia: evidence of molecular heterogeneity and usage of splicing sites frequently involved in the generation of normal AML1 transcripts. (PMID: 7533526) Sacchi N. … Hagemeijer A. (Genes Chromosomes Cancer 1994) 2 3 64
  3. The 3;21 translocation in myelodysplasia results in a fusion transcript between the AML1 gene and the gene for EAP, a highly conserved protein associated with the Epstein-Barr virus small RNA EBER 1. (PMID: 8395054) Nucifora G. … Rowley J.D. (Proc. Natl. Acad. Sci. U.S.A. 1993) 2 3 64

Products for RPL22P1 Gene

Sources for RPL22P1 Gene

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