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Aliases for RPL22P1 Gene

Subcategory (RNA class) for RPL22P1 Gene

lncRNA

Aliases for RPL22P1 Gene

  • Ribosomal Protein L22 Pseudogene 1 2 3
  • Epstein-Barr Virus Small RNA-Associated Protein Pseudogene 1 3
  • Epstein-Barr-Encoded RNA-Associated Protein Pseudogene 1 3
  • EBER-Associated Protein Pseudogene 1 3
  • RPL22_5_435 3
  • AC074033.1 5

External Ids for RPL22P1 Gene

ORGUL Members for RPL22P1 Gene

Previous GeneCards Identifiers for RPL22P1 Gene

  • GC03U990236
  • GC03M169202

Summaries for RPL22P1 Gene

GeneCards Summary for RPL22P1 Gene

RPL22P1 (Ribosomal Protein L22 Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for RPL22P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL22P1 Gene

Genomics for RPL22P1 Gene

Regulatory Elements for RPL22P1 Gene

Enhancers for RPL22P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H169657 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.2 -179.6 -179588 12 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B SP3 MYNN PHC3 SEC62-AS1 ENSG00000270096 PRKCI ENSG00000239628 RPL22P1 SLC7A14 ACTRT3 MECOM
GH03H170221 1.7 FANTOM5 Ensembl ENCODE 12.2 -739.2 -739227 3 HDGF PKNOX1 ARNT SIN3A ZNF2 ZBTB7B YY1 SLC30A9 ZNF766 ZNF207 ENSG00000270096 MYNN SEC62-AS1 ENSG00000239628 PHC3 RPL22P1 PRKCI GPR160 RPL22L1 SLC7A14
GH03H169762 1.4 Ensembl ENCODE 10.1 -280.3 -280339 3 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 ZNF207 MYNN SEC62-AS1 PHC3 ENSG00000239628 PRKCI RPL22P1 LRRC34 ENSG00000277925 PIR60567
GH03H170006 1.2 Ensembl ENCODE dbSUPER 11.3 -523.1 -523087 0 ELF3 MCM3 ETV1 CEBPB ZNF175 ELF1 CEBPG ZNF644 GABPA POLR2A PHC3 GPR160 MYNN LOC100128164 RNU4-38P RPL22P1 SAMD7 LRRC34 LRRIQ4 SEC62
GH03H169699 0.5 ENCODE 9.7 -215.6 -215628 0 SCRT1 SCRT2 ZNF548 PRDM4 NR2F2 MYNN PHC3 SEC62-AS1 RPL22P1 SDHDP3 MECOM
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL22P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL22P1 Gene

Chromosome:
3
Start:
169,483,618 bp from pter
End:
169,484,080 bp from pter
Size:
463 bases
Orientation:
Minus strand

Genomic View for RPL22P1 Gene

Genes around RPL22P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL22P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL22P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL22P1 Gene

Proteins for RPL22P1 Gene

Post-translational modifications for RPL22P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL22P1 Gene

Domains & Families for RPL22P1 Gene

Gene Families for RPL22P1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with RPL22P1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL22P1 Gene

Function for RPL22P1 Gene

Phenotypes From GWAS Catalog for RPL22P1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL22P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL22P1 Gene

Localization for RPL22P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL22P1 Gene

Pathways & Interactions for RPL22P1 Gene

SuperPathways for RPL22P1 Gene

No Data Available

Interacting Proteins for RPL22P1 Gene

Gene Ontology (GO) - Biological Process for RPL22P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL22P1 Gene

Drugs & Compounds for RPL22P1 Gene

No Compound Related Data Available

Transcripts for RPL22P1 Gene

mRNA/cDNA for RPL22P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL22P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL22P1 Gene

No ASD Table

Relevant External Links for RPL22P1 Gene

GeneLoc Exon Structure for
RPL22P1
ECgene alternative splicing isoforms for
RPL22P1

Expression for RPL22P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL22P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL22P1 Gene:

RPL22P1
genes like me logo Genes that share expression patterns with RPL22P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL22P1 Gene

Orthologs for RPL22P1 Gene

Evolution for RPL22P1 Gene

ENSEMBL:
Gene Tree for RPL22P1 (if available)
TreeFam:
Gene Tree for RPL22P1 (if available)

No data available for Orthologs for RPL22P1 Gene

Paralogs for RPL22P1 Gene

No data available for Paralogs for RPL22P1 Gene

Variants for RPL22P1 Gene

Relevant External Links for RPL22P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL22P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL22P1 Gene

Disorders for RPL22P1 Gene

Relevant External Links for RPL22P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL22P1

No disorders were found for RPL22P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL22P1 Gene

Publications for RPL22P1 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. AML1 fusion transcripts in t(3;21) positive leukemia: evidence of molecular heterogeneity and usage of splicing sites frequently involved in the generation of normal AML1 transcripts. (PMID: 7533526) Sacchi N … Hagemeijer A (Genes, chromosomes & cancer 1994) 2 3 60
  3. The 3;21 translocation in myelodysplasia results in a fusion transcript between the AML1 gene and the gene for EAP, a highly conserved protein associated with the Epstein-Barr virus small RNA EBER 1. (PMID: 8395054) Nucifora G … Rowley JD (Proceedings of the National Academy of Sciences of the United States of America 1993) 2 3 60

Products for RPL22P1 Gene

Sources for RPL22P1 Gene

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