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Aliases for RPL22L1 Gene

Aliases for RPL22L1 Gene

  • Ribosomal Protein L22 Like 1 2 3 5
  • Ribosomal Protein L22-Like 1 2

External Ids for RPL22L1 Gene

Previous GeneCards Identifiers for RPL22L1 Gene

  • GC03M172067
  • GC03M170582
  • GC03M167952

Summaries for RPL22L1 Gene

GeneCards Summary for RPL22L1 Gene

RPL22L1 (Ribosomal Protein L22 Like 1) is a Protein Coding gene. Among its related pathways are Viral mRNA Translation. GO annotations related to this gene include structural constituent of ribosome. An important paralog of this gene is RPL22.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL22L1 Gene

Genomics for RPL22L1 Gene

Regulatory Elements for RPL22L1 Gene

Enhancers for RPL22L1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around RPL22L1 on UCSC Golden Path with GeneCards custom track

Promoters for RPL22L1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RPL22L1 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL22L1 Gene

Chromosome:
3
Start:
170,864,875 bp from pter
End:
170,870,483 bp from pter
Size:
5,609 bases
Orientation:
Minus strand

Genomic View for RPL22L1 Gene

Genes around RPL22L1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL22L1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL22L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL22L1 Gene

Proteins for RPL22L1 Gene

  • Protein details for RPL22L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P5R6-RL22L_HUMAN
    Recommended name:
    60S ribosomal protein L22-like 1
    Protein Accession:
    Q6P5R6
    Secondary Accessions:
    • Q32Q77

    Protein attributes for RPL22L1 Gene

    Size:
    122 amino acids
    Molecular mass:
    14607 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH62731.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for RPL22L1 Gene

Post-translational modifications for RPL22L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RPL22L1 Gene

No data available for DME Specific Peptides for RPL22L1 Gene

Domains & Families for RPL22L1 Gene

Protein Domains for RPL22L1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for RPL22L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6P5R6

UniProtKB/Swiss-Prot:

RL22L_HUMAN :
  • Belongs to the ribosomal protein L22e family.
Family:
  • Belongs to the ribosomal protein L22e family.
genes like me logo Genes that share domains with RPL22L1: view

No data available for Gene Families for RPL22L1 Gene

Function for RPL22L1 Gene

Gene Ontology (GO) - Molecular Function for RPL22L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003735 structural constituent of ribosome IBA --
genes like me logo Genes that share ontologies with RPL22L1: view

Phenotypes for RPL22L1 Gene

genes like me logo Genes that share phenotypes with RPL22L1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL22L1 Gene

Localization for RPL22L1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL22L1 Gene COMPARTMENTS Subcellular localization image for RPL22L1 gene
Compartment Confidence
cytosol 4
cytoskeleton 3
nucleus 3
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RPL22L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0022625 cytosolic large ribosomal subunit IBA --
genes like me logo Genes that share ontologies with RPL22L1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL22L1 Gene

Pathways & Interactions for RPL22L1 Gene

SuperPathways for RPL22L1 Gene

Superpath Contained pathways
1 Viral mRNA Translation
.60
genes like me logo Genes that share pathways with RPL22L1: view

Pathways by source for RPL22L1 Gene

1 KEGG pathway for RPL22L1 Gene

SIGNOR curated interactions for RPL22L1 Gene

Is inactivated by:

Gene Ontology (GO) - Biological Process for RPL22L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002181 cytoplasmic translation IBA --
genes like me logo Genes that share ontologies with RPL22L1: view

Drugs & Compounds for RPL22L1 Gene

No Compound Related Data Available

Transcripts for RPL22L1 Gene

Unigene Clusters for RPL22L1 Gene

Ribosomal protein L22-like 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL22L1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b
SP1: - -
SP2: -
SP3: - -
SP4: -

Relevant External Links for RPL22L1 Gene

GeneLoc Exon Structure for
RPL22L1
ECgene alternative splicing isoforms for
RPL22L1

Expression for RPL22L1 Gene

mRNA expression in normal human tissues for RPL22L1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RPL22L1 Gene

This gene is overexpressed in Lung (37.3), Bone (16.7), and Pancreas (8.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RPL22L1 Gene



NURSA nuclear receptor signaling pathways regulating expression of RPL22L1 Gene:

RPL22L1

SOURCE GeneReport for Unigene cluster for RPL22L1 Gene:

Hs.380933
genes like me logo Genes that share expression patterns with RPL22L1: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL22L1 Gene

Orthologs for RPL22L1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RPL22L1 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia RPL22L1 34
  • 93.94 (n)
  • 97.52 (a)
RPL22L1 35
  • 97 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RPL22L1 34
  • 99.73 (n)
  • 99.18 (a)
RPL22L1 35
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rpl22l2 34
  • 92.62 (n)
  • 95.08 (a)
cow
(Bos Taurus)
Mammalia -- 35
  • 87 (a)
OneToMany
-- 35
  • 89 (a)
OneToMany
RPL22L1 35
  • 96 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Rpl22l1 35
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RPL22L1 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves RPL22L1 35
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RPL22L1 35
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl22l1 34
  • 76.67 (n)
  • 85 (a)
Str.15461 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13594 34
zebrafish
(Danio rerio)
Actinopterygii rpl22l1 35
  • 75 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta RpL22 35
  • 21 (a)
ManyToMany
RpL22-like 35
  • 15 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea rpl-22 35
  • 52 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL22A 35
  • 45 (a)
ManyToMany
RPL22B 35
  • 39 (a)
ManyToMany
RPL22B 37
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4506 35
  • 61 (a)
ManyToMany
CSA.5709 35
  • 61 (a)
ManyToMany
Species where no ortholog for RPL22L1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RPL22L1 Gene

ENSEMBL:
Gene Tree for RPL22L1 (if available)
TreeFam:
Gene Tree for RPL22L1 (if available)

Paralogs for RPL22L1 Gene

Paralogs for RPL22L1 Gene

(2) SIMAP similar genes for RPL22L1 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for RPL22L1 Gene

genes like me logo Genes that share paralogs with RPL22L1: view

Variants for RPL22L1 Gene

Sequence variations from dbSNP and Humsavar for RPL22L1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs13462 - 170,866,460(-) GAGTG(G/T)TTGCA reference, missense
rs11919564 -- 170,867,619(+) AATGG(C/T)AGCAA intron-variant
rs13063927 -- 170,865,099(+) CAGAG(C/T)CAAGT utr-variant-3-prime
rs35192046 -- 170,866,275(+) AGTAT(A/C)ATATT utr-variant-3-prime
rs35281809 -- 170,865,320(+) ACCTG(-/A)AAGTA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for RPL22L1 Gene

Variant ID Type Subtype PubMed ID
nsv1012255 CNV gain 25217958
nsv7356 OTHER inversion 18451855

Variation tolerance for RPL22L1 Gene

Residual Variation Intolerance Score: 57.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.71; 32.55% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPL22L1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL22L1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL22L1 Gene

Disorders for RPL22L1 Gene

Relevant External Links for RPL22L1

Genetic Association Database (GAD)
RPL22L1
Human Genome Epidemiology (HuGE) Navigator
RPL22L1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL22L1

No disorders were found for RPL22L1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL22L1 Gene

Publications for RPL22L1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 65
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 65
  3. Reversible oxidation of phosphatase and tensin homolog (PTEN) alters its interactions with signaling and regulatory proteins. (PMID: 26561776) Verrastro I. … Pitt A.R. (Free Radic. Biol. Med. 2016) 3 65
  4. Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt. (PMID: 25737280) Murn J. … Shi Y. (Genes Dev. 2015) 3 65
  5. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R. … Boisvert F.M. (Mol. Cell Proteomics 2015) 3 65

Products for RPL22L1 Gene

Sources for RPL22L1 Gene

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