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Aliases for RPL21P93 Gene

Aliases for RPL21P93 Gene

  • Ribosomal Protein L21 Pseudogene 93 2 3 5
  • RPL21_36_1027 3

External Ids for RPL21P93 Gene

Previous GeneCards Identifiers for RPL21P93 Gene

  • GC10M029231
  • GC10M029282
  • GC10M029360
  • GC10M029432
  • GC10M029606

Summaries for RPL21P93 Gene

GeneCards Summary for RPL21P93 Gene

RPL21P93 (Ribosomal Protein L21 Pseudogene 93) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL21P93 Gene

Genomics for RPL21P93 Gene

Regulatory Elements for RPL21P93 Gene

Enhancers for RPL21P93 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G028838 1.3 Ensembl ENCODE 5.7 +59.9 59896 2.1 PKNOX1 FOXA2 ATF1 ARNT FEZF1 TCF12 ZNF121 CBX5 ELK1 GATA2 RNU6-270P RPL21P93 GC10M029832 C10orf126
GH10G028884 0.8 ENCODE 0.4 +15.0 15018 0.2 SOX13 FOXA2 RARA GATA3 RERE FOS NR2F6 CREM TCF7L2 SOX5 C10orf126 LYZL1 GC10M029672 RNA5SP308 RPL21P93
GH10G028890 0.7 ENCODE 0.4 +8.7 8654 1.5 CTCF TBP SMAD5 CEBPB CEBPG RAD21 FOSL1 SCRT2 ZNF24 ZBTB33 C10orf126 RNU6-270P RPL21P93 RNA5SP308 GC10M029672
GH10G028879 0.7 Ensembl ENCODE 0.4 +19.4 19387 0.7 NR2F2 GABPA C10orf126 RNU6-270P GC10M029672 RNA5SP308 RPL21P93
GH10G028875 0.9 Ensembl ENCODE 0.3 +23.7 23735 0.7 SOX13 SP5 ZIC2 RARA TEAD3 JUND HDAC2 SCRT2 CEBPA TCF7 C10orf126 RNU6-270P RNA5SP308 GC10M029672 RPL21P93
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL21P93 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL21P93 Gene

Chromosome:
10
Start:
28,898,950 bp from pter
End:
28,899,524 bp from pter
Size:
575 bases
Orientation:
Minus strand

Genomic View for RPL21P93 Gene

Genes around RPL21P93 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P93 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P93 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P93 Gene

Proteins for RPL21P93 Gene

Post-translational modifications for RPL21P93 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P93 Gene

Domains & Families for RPL21P93 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL21P93 Gene

Function for RPL21P93 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P93 Gene

Localization for RPL21P93 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL21P93 Gene

Pathways & Interactions for RPL21P93 Gene

SuperPathways for RPL21P93 Gene

No Data Available

Interacting Proteins for RPL21P93 Gene

Gene Ontology (GO) - Biological Process for RPL21P93 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL21P93 Gene

Drugs & Compounds for RPL21P93 Gene

No Compound Related Data Available

Transcripts for RPL21P93 Gene

mRNA/cDNA for RPL21P93 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P93 Gene

No ASD Table

Relevant External Links for RPL21P93 Gene

GeneLoc Exon Structure for
RPL21P93
ECgene alternative splicing isoforms for
RPL21P93

Expression for RPL21P93 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL21P93 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL21P93 Gene:

RPL21P93
genes like me logo Genes that share expression patterns with RPL21P93: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P93 Gene

Orthologs for RPL21P93 Gene

Evolution for RPL21P93 Gene

ENSEMBL:
Gene Tree for RPL21P93 (if available)
TreeFam:
Gene Tree for RPL21P93 (if available)

No data available for Orthologs for RPL21P93 Gene

Paralogs for RPL21P93 Gene

No data available for Paralogs for RPL21P93 Gene

Variants for RPL21P93 Gene

Relevant External Links for RPL21P93 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P93

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL21P93 Gene

Disorders for RPL21P93 Gene

Relevant External Links for RPL21P93

Genetic Association Database (GAD)
RPL21P93

No disorders were found for RPL21P93 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL21P93 Gene

Publications for RPL21P93 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies. (PMID: 20038947) Shyn S.I. … Hamilton S.P. (Mol. Psychiatry 2011) 46 64
  3. A genome-wide association study of DSM-IV cannabis dependence. (PMID: 21668797) Agrawal A. … Bierut L.J. (Addict Biol 2011) 46 64
  4. Genome-wide association identifies the ABO blood group as a major locus associated with serum levels of soluble E-selectin. (PMID: 19729612) Paterson A.D. … Bull S.B. (Arterioscler. Thromb. Vasc. Biol. 2009) 46 64

Products for RPL21P93 Gene

Sources for RPL21P93 Gene

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