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Aliases for RPL21P75 Gene

Subcategory (RNA class) for RPL21P75 Gene

lncRNA

Aliases for RPL21P75 Gene

  • Ribosomal Protein L21 Pseudogene 75 2 3 5
  • RPL21_29_789 3

External Ids for RPL21P75 Gene

Previous GeneCards Identifiers for RPL21P75 Gene

  • GC07P020011
  • GC07P020012

Summaries for RPL21P75 Gene

GeneCards Summary for RPL21P75 Gene

RPL21P75 (Ribosomal Protein L21 Pseudogene 75) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for RPL21P75 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for RPL21P75

Additional gene information for RPL21P75 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for RPL21P75 Gene

Genomics for RPL21P75 Gene

Regulatory Elements for RPL21P75 Gene

Enhancers for RPL21P75 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H019969 0.7 ENCODE 0.3 -32.3 -32330 1 SOX13 SMARCE1 PKNOX1 USF2 NR3C1 DPF2 EP300 FOXA1 ZNF217 CTBP1 GC07P019961 RPL21P75
GH07H019982 0.5 ENCODE 0.4 -19.7 -19703 0 CTCF ZNF654 TRIM22 RAD21 TMEM196 RPL21P75 GC07P019961
GH07H019984 0.4 ENCODE 0.4 -18.4 -18393 0 CTCF TMEM196 RPL21P75 GC07P019961
GH07H019983 0.4 ENCODE 0.4 -19.4 -19379 0 CTCF TRIM22 TMEM196 RPL21P75 GC07P019961
GH07H019967 0.3 FANTOM5 0.3 -35.3 -35318 0 TMEM196 GC07P019961 RPL21P75
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL21P75 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL21P75 Gene

Chromosome:
7
Start:
20,002,725 bp from pter
End:
20,003,292 bp from pter
Size:
568 bases
Orientation:
Plus strand

Genomic View for RPL21P75 Gene

Genes around RPL21P75 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P75 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P75 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P75 Gene

ORGUL Member Location for RPL21P75 Gene

ORGUL Member Location for RPL21P75 gene

Proteins for RPL21P75 Gene

Post-translational modifications for RPL21P75 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P75 Gene

Domains & Families for RPL21P75 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL21P75 Gene

Function for RPL21P75 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL21P75
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P75 Gene

Localization for RPL21P75 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL21P75 Gene

Pathways & Interactions for RPL21P75 Gene

SuperPathways for RPL21P75 Gene

No Data Available

Interacting Proteins for RPL21P75 Gene

Gene Ontology (GO) - Biological Process for RPL21P75 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL21P75 Gene

Drugs & Compounds for RPL21P75 Gene

No Compound Related Data Available

Transcripts for RPL21P75 Gene

fRNAdb Secondary structures for RPL21P75 Gene

  • FR018114
  • FR214019

mRNA/cDNA for RPL21P75 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for RPL21P75
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P75 Gene

No ASD Table

Relevant External Links for RPL21P75 Gene

GeneLoc Exon Structure for
RPL21P75
ECgene alternative splicing isoforms for
RPL21P75

Expression for RPL21P75 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL21P75 Gene

mRNA expression in normal human tissues for RPL21P75 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL21P75 Gene:

RPL21P75
genes like me logo Genes that share expression patterns with RPL21P75: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P75 Gene

Orthologs for RPL21P75 Gene

Evolution for RPL21P75 Gene

ENSEMBL:
Gene Tree for RPL21P75 (if available)
TreeFam:
Gene Tree for RPL21P75 (if available)

No data available for Orthologs for RPL21P75 Gene

Paralogs for RPL21P75 Gene

No data available for Paralogs for RPL21P75 Gene

Variants for RPL21P75 Gene

Relevant External Links for RPL21P75 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P75

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL21P75 Gene

Disorders for RPL21P75 Gene

Relevant External Links for RPL21P75

Genetic Association Database (GAD)
RPL21P75

No disorders were found for RPL21P75 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL21P75 Gene

Publications for RPL21P75 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Common genetic variation and the control of HIV-1 in humans. (PMID: 20041166) Fellay J … NIAID Center for HIV/AIDS Vaccine Immunology (CHAVI) (PLoS genetics 2009) 45 60
  3. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 60
  4. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  5. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for RPL21P75 Gene

Sources for RPL21P75 Gene

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