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Aliases for RPL21P60 Gene

Aliases for RPL21P60 Gene

  • Ribosomal Protein L21 Pseudogene 60 2 3
  • RPL21_23_641 3
  • CTD-2301A4.3 5

External Ids for RPL21P60 Gene

Previous GeneCards Identifiers for RPL21P60 Gene

  • GC05U901115
  • GC05P176692

Summaries for RPL21P60 Gene

GeneCards Summary for RPL21P60 Gene

RPL21P60 (Ribosomal Protein L21 Pseudogene 60) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL21P60 Gene

Genomics for RPL21P60 Gene

Regulatory Elements for RPL21P60 Gene

Enhancers for RPL21P60 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G178220 1.3 FANTOM5 ENCODE dbSUPER 13 +959.8 959822 8.6 CTCF KLF1 AGO1 TEAD4 SALL2 ZIC2 ZNF121 GLIS2 POLR2A SCRT2 HNRNPAB ZNF354B RPL21P60 ZNF354C ENSG00000254035 RMND5B ZFP2 COL23A1 PHYKPL RAB24
GH05G176410 1.6 Ensembl ENCODE dbSUPER 10.1 -849.8 -849810 8.8 PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF143 ZNF207 ENSG00000251414 FAF2 HIGD2A ARL10 NOP16 ENSG00000250909 MIR1271 KIAA1191 CDHR2 RN7SL684P
GH05G177021 1.2 ENCODE 12.5 -242.2 -242186 2.7 CREB3L1 DMAP1 YY1 ZNF416 ZNF143 ZNF263 SP3 SSRP1 ZNF610 GLIS1 FAF2 ENSG00000251414 ENSG00000250909 ZNF346 ENSG00000247679 LOC202181 ZNF346-IT1 RPL21P60 FGFR4 NSD1
GH05G176386 1.4 ENCODE dbSUPER 10.1 -876.3 -876304 4.1 CREB3L1 AGO1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC HIGD2A FAF2 MXD3 ENSG00000251414 ENSG00000250909 ZNF346 RPL21P60 ZNF346-IT1 CLTB NOP16
GH05G177467 1.3 ENCODE dbSUPER 9.7 +206.8 206786 7.1 HDGF PKNOX1 ARID4B SIN3A YBX1 GLIS2 ZNF143 FOS KLF7 ZNF263 MXD3 DOK3 DDX41 ZNF346 ZNF346-IT1 RPL21P60 DBN1 PRR7 FGFR4 ENSG00000279821
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL21P60 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL21P60 Gene

Chromosome:
5
Start:
177,264,726 bp from pter
End:
177,265,274 bp from pter
Size:
549 bases
Orientation:
Plus strand

Genomic View for RPL21P60 Gene

Genes around RPL21P60 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P60 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P60 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P60 Gene

Proteins for RPL21P60 Gene

Post-translational modifications for RPL21P60 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P60 Gene

Domains & Families for RPL21P60 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL21P60 Gene

Function for RPL21P60 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P60 Gene

Localization for RPL21P60 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL21P60 Gene

Pathways & Interactions for RPL21P60 Gene

SuperPathways for RPL21P60 Gene

No Data Available

Interacting Proteins for RPL21P60 Gene

Gene Ontology (GO) - Biological Process for RPL21P60 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL21P60 Gene

Transcripts for RPL21P60 Gene

mRNA/cDNA for RPL21P60 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P60 Gene

No ASD Table

Relevant External Links for RPL21P60 Gene

GeneLoc Exon Structure for
RPL21P60
ECgene alternative splicing isoforms for
RPL21P60

Expression for RPL21P60 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL21P60 Gene

mRNA differential expression in normal tissues according to GTEx for RPL21P60 Gene

This gene is overexpressed in Testis (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of RPL21P60 Gene:

RPL21P60
genes like me logo Genes that share expression patterns with RPL21P60: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P60 Gene

Orthologs for RPL21P60 Gene

Evolution for RPL21P60 Gene

ENSEMBL:
Gene Tree for RPL21P60 (if available)
TreeFam:
Gene Tree for RPL21P60 (if available)

No data available for Orthologs for RPL21P60 Gene

Paralogs for RPL21P60 Gene

No data available for Paralogs for RPL21P60 Gene

Variants for RPL21P60 Gene

Relevant External Links for RPL21P60 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P60

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL21P60 Gene

Disorders for RPL21P60 Gene

No disorders were found for RPL21P60 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL21P60 Gene

Publications for RPL21P60 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL21P60 Gene

Sources for RPL21P60 Gene

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