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Aliases for RPL21P44 Gene

Aliases for RPL21P44 Gene

  • Ribosomal Protein L21 Pseudogene 44 2 3 5
  • RPL21_17_477 3

External Ids for RPL21P44 Gene

Previous GeneCards Identifiers for RPL21P44 Gene

  • GC04M054547
  • GC04M054851
  • GC04M050798

Summaries for RPL21P44 Gene

GeneCards Summary for RPL21P44 Gene

RPL21P44 (Ribosomal Protein L21 Pseudogene 44) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL21P44 Gene

Genomics for RPL21P44 Gene

Regulatory Elements for RPL21P44 Gene

Enhancers for RPL21P44 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G053987 0.5 Ensembl 0.7 -0.6 -619 0.2 ZFHX2 JUND ZSCAN4 FOS EGR2 ENSG00000249706 RPL21P44 ENSG00000272650
GH04G053943 1 ENCODE 0.3 +43.3 43254 1.1 PKNOX1 ARNT SIN3A FEZF1 ZNF2 GATA2 KLF7 FOS SP3 TSHZ1 ENSG00000249706 LOC100129728 RPL21P44
GH04G053991 0.6 ENCODE 0.4 -5.1 -5106 1.8 SOX5 GATAD2A HLF CEBPB RARA CEBPA PRDM10 SP7 CHIC2 ENSG00000249706 ENSG00000272650 RPL21P44
GH04G053962 0.8 Ensembl ENCODE 0.3 +24.2 24159 2.0 JUND FOS FEZF1 EGR2 ENSG00000249706 RPL21P44 LOC100129728
GH04G053929 1.1 Ensembl ENCODE 0.2 +57.3 57309 0.9 RB1 ARID4B RAD21 YY1 ZNF143 MIXL1 ZNF263 ZNF654 USF2 MXD4 GSX2 CHIC2 LOC100129728 RPL21P44
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL21P44 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL21P44 Gene

Chromosome:
4
Start:
53,985,486 bp from pter
End:
53,987,282 bp from pter
Size:
1,797 bases
Orientation:
Minus strand

Genomic View for RPL21P44 Gene

Genes around RPL21P44 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P44 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P44 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P44 Gene

Proteins for RPL21P44 Gene

Post-translational modifications for RPL21P44 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P44 Gene

Domains & Families for RPL21P44 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL21P44 Gene

Function for RPL21P44 Gene

Phenotypes for RPL21P44 Gene

GenomeRNAi human phenotypes for RPL21P44:
genes like me logo Genes that share phenotypes with RPL21P44: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P44 Gene

Localization for RPL21P44 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL21P44 Gene

Pathways & Interactions for RPL21P44 Gene

SuperPathways for RPL21P44 Gene

No Data Available

Interacting Proteins for RPL21P44 Gene

Gene Ontology (GO) - Biological Process for RPL21P44 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL21P44 Gene

Drugs & Compounds for RPL21P44 Gene

No Compound Related Data Available

Transcripts for RPL21P44 Gene

mRNA/cDNA for RPL21P44 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL21P44 Gene

Ribosomal protein L21 pseudogene 44:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P44 Gene

No ASD Table

Relevant External Links for RPL21P44 Gene

GeneLoc Exon Structure for
RPL21P44
ECgene alternative splicing isoforms for
RPL21P44

Expression for RPL21P44 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL21P44 Gene

mRNA differential expression in normal tissues according to GTEx for RPL21P44 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.4) and Brain - Cerebellum (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of RPL21P44 Gene:

RPL21P44

SOURCE GeneReport for Unigene cluster for RPL21P44 Gene:

Hs.452943
genes like me logo Genes that share expression patterns with RPL21P44: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P44 Gene

Orthologs for RPL21P44 Gene

Evolution for RPL21P44 Gene

ENSEMBL:
Gene Tree for RPL21P44 (if available)
TreeFam:
Gene Tree for RPL21P44 (if available)

No data available for Orthologs for RPL21P44 Gene

Paralogs for RPL21P44 Gene

No data available for Paralogs for RPL21P44 Gene

Variants for RPL21P44 Gene

Sequence variations from dbSNP and Humsavar for RPL21P44 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000868507 -- 53,989,043(+) AGCAA(A/T)CCTCC upstream-variant-2KB
rs1002250473 -- 53,988,410(+) TTTTG(-/TTT)TTGTT upstream-variant-2KB
rs1002365161 -- 53,988,601(+) TGTCA(C/T)GTTTT upstream-variant-2KB
rs1005831900 -- 53,988,396(+) GTTTT(-/TTTG)TTTTG upstream-variant-2KB
rs1007630752 -- 53,987,730(+) TTTTA(G/T)TATTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL21P44 Gene

Variant ID Type Subtype PubMed ID
nsv966269 CNV duplication 23825009

Relevant External Links for RPL21P44 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P44

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL21P44 Gene

Disorders for RPL21P44 Gene

Relevant External Links for RPL21P44

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL21P44

No disorders were found for RPL21P44 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL21P44 Gene

Publications for RPL21P44 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for RPL21P44 Gene

Sources for RPL21P44 Gene

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