Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RPL21P40 Gene

Aliases for RPL21P40 Gene

  • Ribosomal Protein L21 Pseudogene 40 2 3 5
  • RPL21_10_356 3

External Ids for RPL21P40 Gene

Previous GeneCards Identifiers for RPL21P40 Gene

  • GC03U901202
  • GC03P032072

Summaries for RPL21P40 Gene

GeneCards Summary for RPL21P40 Gene

RPL21P40 (Ribosomal Protein L21 Pseudogene 40) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL21P40 Gene

Genomics for RPL21P40 Gene

Regulatory Elements for RPL21P40 Gene

Enhancers for RPL21P40 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G032026 0.4 Ensembl 0.7 -3.5 -3454 0.2 NFE2 GPD1L RPL21P40 GC03M031986
GH03G032019 0.7 ENCODE 0.4 -10.9 -10901 0.1 CTCF ZNF654 ZNF740 TRIM22 REST RAD21 KAT8 ZNF366 TARDBP ZNF547 RPL21P40 GC03M031986
GH03G032002 0.6 ENCODE dbSUPER 0.3 -27.5 -27451 0.2 ZIC2 OSBPL10 ZNF860 GC03M031986 RPL21P40
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL21P40 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL21P40 Gene

Chromosome:
3
Start:
32,030,154 bp from pter
End:
32,030,711 bp from pter
Size:
558 bases
Orientation:
Plus strand

Genomic View for RPL21P40 Gene

Genes around RPL21P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P40 Gene

Proteins for RPL21P40 Gene

Post-translational modifications for RPL21P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P40 Gene

Domains & Families for RPL21P40 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL21P40 Gene

Function for RPL21P40 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P40 Gene

Localization for RPL21P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL21P40 Gene

Pathways & Interactions for RPL21P40 Gene

SuperPathways for RPL21P40 Gene

No Data Available

Interacting Proteins for RPL21P40 Gene

Gene Ontology (GO) - Biological Process for RPL21P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL21P40 Gene

Drugs & Compounds for RPL21P40 Gene

No Compound Related Data Available

Transcripts for RPL21P40 Gene

mRNA/cDNA for RPL21P40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P40 Gene

No ASD Table

Relevant External Links for RPL21P40 Gene

GeneLoc Exon Structure for
RPL21P40
ECgene alternative splicing isoforms for
RPL21P40

Expression for RPL21P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL21P40 Gene

mRNA differential expression in normal tissues according to GTEx for RPL21P40 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x9.6), Spleen (x8.8), Kidney - Cortex (x4.5), and Whole Blood (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of RPL21P40 Gene:

RPL21P40
genes like me logo Genes that share expression patterns with RPL21P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P40 Gene

Orthologs for RPL21P40 Gene

Evolution for RPL21P40 Gene

ENSEMBL:
Gene Tree for RPL21P40 (if available)
TreeFam:
Gene Tree for RPL21P40 (if available)

No data available for Orthologs for RPL21P40 Gene

Paralogs for RPL21P40 Gene

No data available for Paralogs for RPL21P40 Gene

Variants for RPL21P40 Gene

Relevant External Links for RPL21P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL21P40 Gene

Disorders for RPL21P40 Gene

No disorders were found for RPL21P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL21P40 Gene

Publications for RPL21P40 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL21P40 Gene

Sources for RPL21P40 Gene

Content
Loading form....