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Aliases for RPL21P28 Gene

Aliases for RPL21P28 Gene

  • Ribosomal Protein L21 Pseudogene 28 2 3 5
  • RPL21_8_160 3

External Ids for RPL21P28 Gene

Previous GeneCards Identifiers for RPL21P28 Gene

  • GC01M210294
  • GC01M212225
  • GC01M182901

Summaries for RPL21P28 Gene

GeneCards Summary for RPL21P28 Gene

RPL21P28 (Ribosomal Protein L21 Pseudogene 28) is a Pseudogene.

Additional gene information for RPL21P28 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL21P28 Gene

Genomics for RPL21P28 Gene

Regulatory Elements for RPL21P28 Gene

Enhancers for RPL21P28 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H212481 2 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -433.9 -433866 8.2 PKNOX1 FOXA2 ARNT SIN3A FEZF1 ZNF2 ZNF766 FOS DEK SP3 LOC105372907 ATF3 ANGEL2 BATF3 RPL21P28 LOC105372908
GH01H212476 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -425.7 -425722 1.7 PKNOX1 ATF1 BRCA1 ZNF766 GATA2 ELK1 ZNF143 ATF7 RUNX3 CAVIN1 LOC105372907 ATF3 NENF FAM71A ENSG00000235862 BATF3 TMEM206 RPL21P28 ENSG00000212187 VASH2
GH01H211927 1.6 Ensembl ENCODE dbSUPER 10.2 +122.6 122594 3.7 HDGF FOXA2 ARNT ARID4B FEZF1 DMAP1 YY1 ZNF766 FOS SP5 LOC102723727 RCOR3 LPGAT1 LOC91548 NEK2 SNX25P1 ENSG00000212187 RPL21P28 INTS7 ENSG00000233626
GH01H211610 1.6 Ensembl ENCODE dbSUPER 10.1 +439.1 439103 4.3 HDGF PKNOX1 ARNT YY1 ZNF766 CBX5 FOS REST SMARCB1 ZNF592 SLC30A1 RCOR3 RPL21P28 LOC105372903 LINC01693
GH01H212234 1.5 Ensembl ENCODE dbSUPER 10.1 -184.9 -184875 5.6 HDGF ATF1 ARNT YY1 TCF12 ZNF766 CBX5 ELK1 ATF7 FOS LOC101929541 TMEM206 RCOR3 RPL21P28 GC01P212241 GC01M212205
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL21P28 on UCSC Golden Path with GeneCards custom track

Genomic Locations for RPL21P28 Gene

Genomic Locations for RPL21P28 Gene
chr1:212,051,486-212,052,051
(GRCh38/hg38)
Size:
566 bases
Orientation:
Minus strand
chr1:212,224,828-212,225,393
(GRCh37/hg19)

Genomic View for RPL21P28 Gene

Genes around RPL21P28 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL21P28 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL21P28 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL21P28 Gene

Proteins for RPL21P28 Gene

Post-translational modifications for RPL21P28 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL21P28 Gene

Domains & Families for RPL21P28 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL21P28 Gene

Function for RPL21P28 Gene

Phenotypes From GWAS Catalog for RPL21P28 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL21P28 Gene

Localization for RPL21P28 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for RPL21P28 Gene

Pathways & Interactions for RPL21P28 Gene

SuperPathways for RPL21P28 Gene

No Data Available

Interacting Proteins for RPL21P28 Gene

Gene Ontology (GO) - Biological Process for RPL21P28 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL21P28 Gene

Drugs & Compounds for RPL21P28 Gene

No Compound Related Data Available

Transcripts for RPL21P28 Gene

mRNA/cDNA for RPL21P28 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RPL21P28 Gene

Ribosomal protein L21 pseudogene 28:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL21P28 Gene

No ASD Table

Relevant External Links for RPL21P28 Gene

GeneLoc Exon Structure for
RPL21P28
ECgene alternative splicing isoforms for
RPL21P28

Expression for RPL21P28 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RPL21P28 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL21P28 Gene:

RPL21P28

SOURCE GeneReport for Unigene cluster for RPL21P28 Gene:

Hs.126774
genes like me logo Genes that share expression patterns with RPL21P28: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for RPL21P28 Gene

Orthologs for RPL21P28 Gene

Evolution for RPL21P28 Gene

ENSEMBL:
Gene Tree for RPL21P28 (if available)
TreeFam:
Gene Tree for RPL21P28 (if available)

No data available for Orthologs for RPL21P28 Gene

Paralogs for RPL21P28 Gene

No data available for Paralogs for RPL21P28 Gene

Variants for RPL21P28 Gene

Sequence variations from dbSNP and Humsavar for RPL21P28 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000084737 -- 212,052,736(+) TATAT(A/G)TATAT intron-variant, upstream-variant-2KB
rs1000987910 -- 212,053,587(+) GTTTT(-/TTG)TTGTT intron-variant, upstream-variant-2KB
rs1002768272 -- 212,051,855(+) GCATT(A/C)CTTTT intron-variant, nc-transcript-variant
rs1003607113 -- 212,053,128(+) GTTCT(A/G)TTTTT intron-variant, upstream-variant-2KB
rs1003837055 -- 212,053,463(+) GCTGG(G/T)ATTAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RPL21P28 Gene

Variant ID Type Subtype PubMed ID
nsv945281 CNV duplication 23825009
nsv506979 OTHER sequence alteration 20534489
nsv4432 CNV insertion 18451855

Relevant External Links for RPL21P28 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL21P28

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for RPL21P28 Gene

Disorders for RPL21P28 Gene

Relevant External Links for RPL21P28

Genetic Association Database (GAD)
RPL21P28
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL21P28

No disorders were found for RPL21P28 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL21P28 Gene

Publications for RPL21P28 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S … Gerstein M (Genome biology 2009) 2 3 60
  2. Chromosome 6p22 locus associated with clinically aggressive neuroblastoma. (PMID: 18463370) Maris JM … Hakonarson H (The New England journal of medicine 2008) 45 60
  3. A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang SJ … Fox CS (BMC medical genetics 2007) 45 60
  4. Genome-wide association of sleep and circadian phenotypes. (PMID: 17903308) Gottlieb DJ … Wilk JB (BMC medical genetics 2007) 45 60

Products for RPL21P28 Gene

Sources for RPL21P28 Gene

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