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Aliases for RPL19 Gene

Aliases for RPL19 Gene

  • Ribosomal Protein L19 2 3 5
  • 60S Ribosomal Protein L19 2 3
  • Ribosomal Protein L19, Cytosolic, N-Terminus Truncated 2
  • L19 3

External Ids for RPL19 Gene

Previous GeneCards Identifiers for RPL19 Gene

  • GC17P036860
  • GC17P039354
  • GC17P037266
  • GC17P037731
  • GC17P034610
  • GC17P037356

Summaries for RPL19 Gene

Entrez Gene Summary for RPL19 Gene

  • Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L19E family of ribosomal proteins. It is located in the cytoplasm. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008]

GeneCards Summary for RPL19 Gene

RPL19 (Ribosomal Protein L19) is a Protein Coding gene. Among its related pathways are Metabolism and Viral mRNA Translation. GO annotations related to this gene include poly(A) RNA binding and structural constituent of ribosome.

Gene Wiki entry for RPL19 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL19 Gene

Genomics for RPL19 Gene

Regulatory Elements for RPL19 Gene

Enhancers for RPL19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F039174 1.3 Ensembl ENCODE 22.7 -25.4 -25390 1.6 CTCF ZFP64 KLF17 ZNF140 ZNF266 ZNF48 RAD21 ZNF101 HIC1 ZBTB48 ENSG00000275665 CDK12 ENSG00000266469 MED1 ENSG00000275532 RPL19 SNORA21 CACNB1 LOC100287808 RPL23
GH17F040138 0.2 ENCODE 18.8 +940.1 940056 3.2 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 MCM3 ENSG00000266469 MED1 CDK12 RPL19 LOC105371776 SNORD124 MSL1 RPL23AP75 TMEM99 IGFBP4
GH17F038823 0.7 ENCODE 18.6 -375.3 -375346 3.0 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC MED1 ENSG00000266469 CDK12 ENSG00000275532 SNORA21 RPL23 ENSG00000275665 RPL19 PIP4K2B CWC25
GH17F039978 1 ENCODE 18.6 +780.2 780188 4.0 CREB3L1 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 CDK12 ENSG00000266469 MED1 GSDMA IGFBP4 RPL19 LINC02079 LOC105371776 SNORD124 LRRC3C
GH17F039178 0.6 ENCODE 12.7 -21.6 -21551 0.2 KLF1 JUND ZNF362 INSM2 KLF17 KLF9 KLF4 RPL19 LOC105371768 CACNB1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around RPL19 on UCSC Golden Path with GeneCards custom track

Promoters for RPL19 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001345616 117 2001 HDGF ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207

Genomic Location for RPL19 Gene

Chromosome:
17
Start:
39,200,283 bp from pter
End:
39,204,727 bp from pter
Size:
4,445 bases
Orientation:
Plus strand

Genomic View for RPL19 Gene

Genes around RPL19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL19 Gene

Proteins for RPL19 Gene

  • Protein details for RPL19 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P84098-RL19_HUMAN
    Recommended name:
    60S ribosomal protein L19
    Protein Accession:
    P84098
    Secondary Accessions:
    • B2R4K2
    • P14118
    • P22908
    • Q502Y6
    • Q7Z6E4

    Protein attributes for RPL19 Gene

    Size:
    196 amino acids
    Molecular mass:
    23466 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD97677.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for RPL19 Gene

neXtProt entry for RPL19 Gene

Post-translational modifications for RPL19 Gene

  • Citrullinated by PADI4.
  • Ubiquitination at Lys 21, Lys 46, Lys 92, Lys 128, Lys 153, Lys 180, and Lys 181
  • Modification sites at PhosphoSitePlus

Other Protein References for RPL19 Gene

No data available for DME Specific Peptides for RPL19 Gene

Domains & Families for RPL19 Gene

Gene Families for RPL19 Gene

Suggested Antigen Peptide Sequences for RPL19 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P84098

UniProtKB/Swiss-Prot:

RL19_HUMAN :
  • Belongs to the ribosomal protein L19e family.
Family:
  • Belongs to the ribosomal protein L19e family.
genes like me logo Genes that share domains with RPL19: view

Function for RPL19 Gene

Molecular function for RPL19 Gene

GENATLAS Biochemistry:
60S ribosomal protein L19,23kDa

Gene Ontology (GO) - Molecular Function for RPL19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS 1577483
GO:0003735 structural constituent of ribosome IEA,TAS 1577483
GO:0005515 protein binding IPI 21044950
GO:0044822 poly(A) RNA binding IDA 22658674
GO:0070180 large ribosomal subunit rRNA binding IEA --
genes like me logo Genes that share ontologies with RPL19: view
genes like me logo Genes that share phenotypes with RPL19: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for RPL19 Gene

Localization for RPL19 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RPL19 Gene COMPARTMENTS Subcellular localization image for RPL19 gene
Compartment Confidence
cytosol 5
nucleus 5
chloroplast 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RPL19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
GO:0005829 cytosol TAS --
GO:0005840 ribosome IEA --
genes like me logo Genes that share ontologies with RPL19: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for RPL19 Gene

Pathways & Interactions for RPL19 Gene

genes like me logo Genes that share pathways with RPL19: view

Pathways by source for RPL19 Gene

1 KEGG pathway for RPL19 Gene
1 GeneGo (Thomson Reuters) pathway for RPL19 Gene

Gene Ontology (GO) - Biological Process for RPL19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS --
GO:0006364 rRNA processing TAS --
GO:0006412 translation IEA,TAS 1577483
GO:0006413 translational initiation TAS --
GO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS --
genes like me logo Genes that share ontologies with RPL19: view

No data available for SIGNOR curated interactions for RPL19 Gene

Drugs & Compounds for RPL19 Gene

(4) Drugs for RPL19 Gene - From: DrugBank and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Alpha-Hydroxy-Beta-Phenyl-Propionic Acid Experimental Pharma Target 0
Anisomycin Experimental Pharma Target JNK agonist, potent and specific 0
puromycin Experimental Pharma Target 0

(1) Additional Compounds for RPL19 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RPL19: view

Transcripts for RPL19 Gene

Unigene Clusters for RPL19 Gene

Ribosomal protein L19:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for RPL19 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1:
SP2: -
SP3:

Relevant External Links for RPL19 Gene

GeneLoc Exon Structure for
RPL19
ECgene alternative splicing isoforms for
RPL19

Expression for RPL19 Gene

mRNA expression in normal human tissues for RPL19 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for RPL19 Gene

This gene is overexpressed in Nasal epithelium (7.5) and Tlymphocyte (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for RPL19 Gene



Protein tissue co-expression partners for RPL19 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RPL19 Gene:

RPL19

SOURCE GeneReport for Unigene cluster for RPL19 Gene:

Hs.381061
genes like me logo Genes that share expression patterns with RPL19: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for RPL19 Gene

Orthologs for RPL19 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL19 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia RPL19 35
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RPL19 34 35
  • 99.83 (n)
cow
(Bos Taurus)
Mammalia RPL19 34 35
  • 93.37 (n)
dog
(Canis familiaris)
Mammalia RPL19 34 35
  • 92.01 (n)
mouse
(Mus musculus)
Mammalia Rpl19 34 16 35
  • 92.01 (n)
rat
(Rattus norvegicus)
Mammalia Rpl19 34
  • 90.99 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia RPL19 35
  • 65 (a)
OneToOne
chicken
(Gallus gallus)
Aves RPL19 34 35
  • 84.18 (n)
lizard
(Anolis carolinensis)
Reptilia RPL19 35
  • 100 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rpl19 34
  • 81.29 (n)
zebrafish
(Danio rerio)
Actinopterygii rpl19 34 35
  • 78.06 (n)
Dr.29055 34
fruit fly
(Drosophila melanogaster)
Insecta RpL19 36 34 35
  • 70.47 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004422 34
  • 68.73 (n)
worm
(Caenorhabditis elegans)
Secernentea rpl-19 36 34 35
  • 62.2 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RPL19A 35
  • 57 (a)
OneToMany
RPL19B 34 35 37
  • 54.3 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER179C 34
  • 55.91 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E12453g 34
  • 54.3 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G02230 34
  • 63.84 (n)
soybean
(Glycine max)
eudicotyledons Gma.10683 34
rice
(Oryza sativa)
Liliopsida Os03g0337800 34
  • 63.4 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.3248 34
wheat
(Triticum aestivum)
Liliopsida Ta.2739 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.5596 35
  • 71 (a)
OneToOne
bread mold
(Neurospora crassa)
Ascomycetes NCU05804 34
  • 62.67 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rpl1902 34
  • 56.48 (n)
Species where no ortholog for RPL19 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for RPL19 Gene

ENSEMBL:
Gene Tree for RPL19 (if available)
TreeFam:
Gene Tree for RPL19 (if available)

Paralogs for RPL19 Gene

No data available for Paralogs for RPL19 Gene

Variants for RPL19 Gene

Sequence variations from dbSNP and Humsavar for RPL19 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111516501 -- 39,201,401(+) TTGAC(-/T)TTTTT intron-variant
rs111576076 -- 39,204,174(+) CCCGC(A/G/T)AGAAG reference, missense, stop-gained
rs111601168 -- 39,202,401(+) GAAAA(A/G)CACCT reference, missense
rs111750810 -- 39,204,515(+) CTCTT(A/C)CCTGA intron-variant
rs111994133 -- 39,204,592(+) TCCAG(A/G)CCAAG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for RPL19 Gene

Variant ID Type Subtype PubMed ID
nsv1146669 OTHER inversion 26484159
nsv833440 CNV loss 17160897
nsv833441 CNV loss 17160897
nsv960100 CNV duplication 23825009

Variation tolerance for RPL19 Gene

Residual Variation Intolerance Score: 58.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.03; 0.78% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RPL19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RPL19 Gene

Disorders for RPL19 Gene

Relevant External Links for RPL19

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RPL19

No disorders were found for RPL19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for RPL19 Gene

Publications for RPL19 Gene

  1. High-level expression of the ribosomal protein L19 in human breast tumors that overexpress erbB-2. (PMID: 8095182) Henry J.L. … King C.R. (Cancer Res. 1993) 3 4 22 64
  2. Human cDNAs encoding elongation factor 1 gamma and the ribosomal protein L19. (PMID: 1598220) Kumabe T. … Yamamoto T. (Nucleic Acids Res. 1992) 3 4 22 64
  3. Identification of ribosomal protein L19 as a novel tumor antigen recognized by autologous cytotoxic T lymphocytes in lung adenocarcinoma. (PMID: 19799608) Kuroda K. … Yasumoto K. (Cancer Sci. 2010) 3 22 64
  4. Ribosomal protein l19 is a prognostic marker for human prostate cancer. (PMID: 16609016) Bee A. … Foster C.S. (Clin. Cancer Res. 2006) 3 22 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for RPL19 Gene

Sources for RPL19 Gene

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