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Aliases for RPL18AP6 Gene

Aliases for RPL18AP6 Gene

  • Ribosomal Protein L18a Pseudogene 6 2 3
  • RPL18A_1_215 3
  • AC079250.1 5

External Ids for RPL18AP6 Gene

Previous GeneCards Identifiers for RPL18AP6 Gene

  • GC02M047773
  • GC02M047918

Summaries for RPL18AP6 Gene

GeneCards Summary for RPL18AP6 Gene

RPL18AP6 (Ribosomal Protein L18a Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RPL18AP6 Gene

Genomics for RPL18AP6 Gene

Regulatory Elements for RPL18AP6 Gene

Enhancers for RPL18AP6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F047038 1.8 FANTOM5 Ensembl ENCODE 10.6 +649.2 649219 6.8 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ENSG00000228925 ENSG00000233845 ENSG00000225187 LOC100506142 RPL36AP15 RPL18AP6 C2orf61
GH02F047268 1.7 FANTOM5 Ensembl ENCODE 10.7 +419.1 419078 6.7 HDGF ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 CBX5 ZNF143 FOS ENSG00000228925 ENSG00000233845 ENSG00000225187 LOC100506142 CALM2 RPL36AP15 SOCS5 RPL18AP6 C2orf61 PIR36995
GH02F047322 1.2 Ensembl ENCODE 10.7 +367.9 367927 1.2 HDGF ATF1 PKNOX1 ZFP64 ARID4B SIN3A ZNF48 BRCA1 ZNF2 ZNF207 ENSG00000228925 RPL18AP6 LOC101927043 GC02P047335 GC02M047306
GH02F047169 1.2 ENCODE 10.6 +517.4 517432 8.4 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ENSG00000225187 ENSG00000228925 SOCS5 ENSG00000253515 TMEM247 ENSG00000226473 LOC100506142 RPL36AP15 RPL18AP6 ENSG00000233845
GH02F048247 1.5 FANTOM5 Ensembl ENCODE 4.3 -559.6 -559633 6.6 ATF1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 GATA2 FOS SP5 FOXN2 PPP1R21 MSH6 RPL18AP6 LOC102724008 GC02P048244
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RPL18AP6 on UCSC Golden Path with GeneCards custom track

Genomic Location for RPL18AP6 Gene

Chromosome:
2
Start:
47,690,667 bp from pter
End:
47,691,283 bp from pter
Size:
617 bases
Orientation:
Minus strand

Genomic View for RPL18AP6 Gene

Genes around RPL18AP6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RPL18AP6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RPL18AP6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RPL18AP6 Gene

Proteins for RPL18AP6 Gene

Post-translational modifications for RPL18AP6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for RPL18AP6 Gene

Domains & Families for RPL18AP6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for RPL18AP6 Gene

Function for RPL18AP6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for RPL18AP6 Gene

Localization for RPL18AP6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for RPL18AP6 Gene

Pathways & Interactions for RPL18AP6 Gene

SuperPathways for RPL18AP6 Gene

No Data Available

Interacting Proteins for RPL18AP6 Gene

Gene Ontology (GO) - Biological Process for RPL18AP6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for RPL18AP6 Gene

Transcripts for RPL18AP6 Gene

mRNA/cDNA for RPL18AP6 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for RPL18AP6 Gene

No ASD Table

Relevant External Links for RPL18AP6 Gene

GeneLoc Exon Structure for
RPL18AP6
ECgene alternative splicing isoforms for
RPL18AP6

Expression for RPL18AP6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for RPL18AP6 Gene

NURSA nuclear receptor signaling pathways regulating expression of RPL18AP6 Gene:

RPL18AP6
genes like me logo Genes that share expression patterns with RPL18AP6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for RPL18AP6 Gene

Orthologs for RPL18AP6 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for RPL18AP6 Gene

Organism Taxonomy Gene Similarity Type Details
barley
(Hordeum vulgare)
Liliopsida Hv.8577 34
Species where no ortholog for RPL18AP6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RPL18AP6 Gene

ENSEMBL:
Gene Tree for RPL18AP6 (if available)
TreeFam:
Gene Tree for RPL18AP6 (if available)

Paralogs for RPL18AP6 Gene

No data available for Paralogs for RPL18AP6 Gene

Variants for RPL18AP6 Gene

Relevant External Links for RPL18AP6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
RPL18AP6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for RPL18AP6 Gene

Disorders for RPL18AP6 Gene

No disorders were found for RPL18AP6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for RPL18AP6 Gene

Publications for RPL18AP6 Gene

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. (PMID: 19123937) Balasubramanian S. … Gerstein M. (Genome Biol. 2009) 2 3 64

Products for RPL18AP6 Gene

Sources for RPL18AP6 Gene

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